A free, open-source, globally available tool for DNA sequence screening
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Sep 3, 2026 - Python
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biosecurity
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Implementation of FoldMark: Safeguarding Protein Structure Generative Models with Distributional and Evolutionary Watermarking
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Jul 30, 2026 - Python
Injecting watermarks to protein sequences for privacy protection in biosecurity
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Oct 1, 2024 - Jupyter Notebook
Reproducible, evergreen benchmark for LLM refusal on biological research prompts β 19 models, 141 prompts, 13,389 adjudicated trials
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Jun 6, 2026 - Python
Fast multi-threaded sequence filtration using k-mers
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Jul 22, 2026 - Rust
Pre-etiologic zoonotic-spillover risk forecasting at 25 km tile resolution. Methodology, 25-event validation cohort, bio-domain accountability framework, MCP server source. Aqta Technologies Limited (Dublin).
mcp fhir public-health xgboost epidemiology shap one-health biosecurity pandemic-preparedness early-warning zoonotic-spillover
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Sep 1, 2026 - Python
Reference-free, privacy-preserving wastewater pathogen surveillance for federated hospital networks. DNABERT-2 embeddings + Transformer-encoder VAE detect emerging anomaly clusters in unclassified reads. AIxBio Hackathon Track 2, Apart Research.
bioinformatics deep-learning metagenomics public-health anomaly-detection variational-autoencoder hackathon-project federated-learning pathogen-detection biosecurity wastewater-surveillance pandemic-preparedness dnabert aixbio
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Apr 29, 2026 - Jupyter Notebook
Invariant is an open-source, cryptographic command-validation firewall that sits between AI models and actuators to provide provable, deterministic safety profiles and append-only signed audit logs for physical systems like robotics and biosynthesis lines.
cryptography robotics rust-lang industrial-automation formal-verification cos ai-safety autonomous-systems zero-trust cyber-physical-systems hardware-security audit-logging biosynthesis humanoid-robotics lean4 biosecurity physical-ai bsl-gating
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Aug 30, 2026 - Rust
ESM-2 protein-retrieval failure-mode study with preregistered evidence, calibration analysis, and explicit curation limits.
bioinformatics reproducible-research reproducibility persistent-homology homology pre-registration reproducibility-challenge biosecurity protein-language-models esm-2 homology-protein-modelling reproducibility-research
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Aug 30, 2026 - Python
AI-powered livestock disease diagnosis platform using Gemini AI to analyze symptoms, map local outbreaks on a live GIS layer, and generate vet PDF reports β built as an offline-capable PWA with React, FastAPI, and MongoDB
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Jun 14, 2026 - JavaScript
Fruit fly introduction risk dashboard for USDA APHIS PPQ. Dual frontend: Leaflet.js geospatial dashboard + Streamlit analytics platform (Poisson GLM, Pseudo-R2 0.68). Covers 6 invasive species across air passenger & cargo pathways. USDA Γγ°γ€ CSU Hackathon 2026.
python agriculture hackathon leaflet geospatial invasive-species usda poisson-regression streamlit risk-modeling biosecurity fruit-fly aphis phytosanitary
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Jun 30, 2026 - Python
AI in Biosecurity: Dual-Use Risks and Governance Gaps β a defensive, non-operational policy explainer from a security-engineering lens. Author: Krishita Sanjay Choksi.
threat-modeling ai-safety security-engineering explainer ai-policy biosecurity ai-governance biosafety dual-use dna-synthesis-screening biosecurity-policy
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Aug 26, 2026 - TeX
A rule-governed, genome-writing-native biosecurity middleware that supervises agentic design AI. It inspects the plan a design agent produced, not just the final sequence, across five hazard axes and returns allow / flag-for-review / refuse with cited evidence and a signed design passport. Open-data, safe-proxy reference implementation.
middleware reproducible-research computational-biology open-science ai-safety guardrails biosecurity agentic-ai dual-use genome-writing
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Aug 24, 2026 - Python
CRC-Screen: Certified DNA-Synthesis Hazard Screening Under Taxonomic Shift
ai-safety conformal-prediction biosecurity dna-screening llm-as-judge calibrated-classification conformal-risk-control
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May 4, 2026 - Python
Machine-readable taxonomy of the ten colour-coded branches of biotechnology and their 85 subtypes. Every record carries a technical and a plain-language register, metrics with units and evidence grades, dated milestones including setbacks, regulatory placement and typed cross-references. Zero runtime dependencies.
python education bioinformatics taxonomy open-data dataset knowledge-base life-sciences eupl biotechnology reference-data sustainable-development-goals bioethics science-communication research-software plain-language biosecurity biosafety
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Sep 7, 2026 - Python
A data science platform for various problems in coronavirus research.
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May 1, 2026 - Python
The website for biosecurity.world
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Aug 17, 2026 - PHP
Closed-form sequencing depth bounds for detecting divergent pathogens in clinical metagenomic sequencing (mNGS)
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Aug 15, 2026 - Python
Mapping the distribution of high-containment laboratories and projected climate-related hazards
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Nov 21, 2025 - HTML
π§¬π‘οΈ Function-aware DNA synthesis screening against AI-designed biological threats | ESM-2 3B + contrastive learning | AUROC 0.998 | 99.3% detection at <40% identity
machine-learning bioinformatics pytorch fastapi contrastive-learning biosecurity protein-language-model dna-screening esm2
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Apr 25, 2026 - Python
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