Detailed bioinformatics scripts and methods used in the NAM genome paper.
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Jan 14, 2025 - R
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bioinformatics-scripts
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Code for design of diagnostic PCR primers, and metabarcoding markers.
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Nov 7, 2023 - Python
Natural Language Search and Analysis of High Dimensional Genomic Data
bioinformatics genomics bioinformatics-pipeline bioinformatics-analysis bioinformatics-scripts bioinformatics-databases bioinformatics-algorithms genomics-search
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Aug 7, 2025 - Python
High-throughput gene to knowledge mapping through massive integration of public sequencing data.
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Feb 26, 2019 - Jupyter Notebook
Talleres Internacionales de Bioinformática - Centro de Ciencias Genómicas, UNAM, Cuernavaca, México
bioinformatics tutorials linux-shell phylogenetics model-selection blast maximum-likelihood phylogenomics bioinformatics-scripts bash-scripting pangenomics multiple-sequence-alignment hmmer3 reciprocal-blast-hits profile-hmms
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Aug 11, 2025 - Shell
programs and scripts, mainly python, for analyses related to nucleic or protein sequences
python lists list bioinformatics genomics dna rna protein-sequences bioinformatics-analysis bioinformatics-scripts
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Aug 4, 2025 - Python
Explore biomolecular pathways in Reactome from the command-line or a Python script
bioinformatics bioinformatics-pipeline pathway-analysis reactome molecular-biology bioinformatics-analysis protein-protein-interaction bioinformatics-scripts biotechnology biological-networks biotech pathway-models bioinformatics-tool reactome-pathway pathway-enrichment-analysis
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Oct 12, 2024 - Python
Scripts and procedures for detecting positively selected genes and codons in primates
bioinformatics genomics genetics evolution computational-biology ensembl bioinformatics-pipeline comparative-genomics genomes genome-analysis sequence-alignment bioinformatics-analysis positive-selection bioinformatics-scripts immunity primates codeml
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Nov 14, 2020 - Perl
A suite of bioinformatics data processing and analysis pipelines, software, and training resources for common methods.
bioinformatics snps genomics nextflow cancer somatic-variants ngs metagenomics bioinformatics-pipeline rnaseq variant-calling transcriptomics indels bioinformatics-analysis bioinformatics-scripts germline-variants research-computing nextflow-pipelines sydney-informatics-hub
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Jun 26, 2025
A mosaic genome painting tool for plant genomes
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Mar 4, 2025 - JavaScript
A Python script to map PDB ID + chain ID to UniProt ID.
bioinformatics mapping uniprot uniprot-ids bioinformatics-scripts uniprotkb pdb-files pdb-database bioinformatics-tool rcsb pdb-structure
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Mar 7, 2024 - Python
This project proposes to contribute to fill the knowledge gap about Covid-19SARS-CoV-2 in Brazil and with the global knowledge about the pathogen. The scientific community and governments of other countries are looking for actions along these lines. The United Kingdom recently established a research network for genomic studies of SARS-CoV-2Covid...
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Apr 27, 2023 - R
A set of processes/pipelines for bioinformatics
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Aug 26, 2025 - Python
Split multi fasta file into single fasta files
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Feb 24, 2020 - Python
👨🔬 Analysis Pipelines and Useful Tools
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Sep 4, 2018 - R
A collection of useful bioinformatics scripts.
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Dec 13, 2016 - Python
Filter for reads from taxa of interest using Kraken2/Centrifuge classification results.
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Dec 26, 2022 - Python
Using data from PDBePISA with the convenience of Python and Jupyter.
python bioinformatics snakemake genomics pandas-dataframe protein-structure pandas bioinformatics-pipeline protein-sequences bioinformatics-analysis bioinformatics-scripts nucleic-acids nucleic-sequence
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Nov 20, 2024 - Jupyter Notebook
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