GitHub template for autonomous strategic research using Claude Code
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Nov 18, 2025 - Markdown
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ai-assisted-research
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Local-first, user-governed Research Room for structured AI-assisted research deliberation.
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Sep 6, 2026 - TypeScript
Agent skills for systematic review, meta-analysis, umbrella review, and AI-assisted evidence synthesis.
meta-analysis systematic-literature-reviews systematic-reviews literature-review prisma evidence-synthesis research-synthesis agent-skills ai-assisted-research umbrella-review
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Jul 30, 2026 - Python
A small, docs-first workflow for AI-assisted research that keeps claims, sources, uncertainty, review findings and human decisions inspectable.
documentation provenance ai-research responsible-ai source-tracking research-integrity llm ai-assisted-writing auditability claim-verification ai-transparency ai-assisted-research research-workflow review-gates publication-safety
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Jul 1, 2026 - PowerShell
A file-based governance harness that turns loose research ideas into proposals that hold up. Makes three things checkable: which page a claim rests on, what would refute it, and what the AI just changed. Human stays the sole adjudicator. Bilingual (EN / 繁中).
reproducibility bilingual research-governance llm-agents evidence-verification ai-assisted-research falsifiability
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Sep 2, 2026 - Python
Provide one research direction, it will generate entire project and complete research paper for you. Can generate many more types of documents!
reports ai-assisted-writing ai-assisted-coding paperwriter ai-assisted-reading ai-assisted-research paperfessor professor-meerk
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Jul 19, 2026 - Python
Human-led, evidence-gated full-cycle research execution for Codex and Claude Code · 人类主导的科研全流程辅助工具
research reproducibility codex scientific-workflow research-tools agent-skills claude-code ai-assisted-research rigorous-research
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Aug 16, 2026 - Python
Safe, repeatable Codex-assisted family-history research workflows for FamilySearch.org
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Jul 16, 2026
Open research repository for inclusive charm semileptonic decays, HQET/OPE, and reproducible thesis-source workflows.
latex reproducible-research ai-assisted-research phenomenology-in-ai heavy-flavor-physics hqet inclusive-decays
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Jul 6, 2026 - TeX
Formal Verification of Whittaker-Type Zero-Invariant Fields and Receiver Symmetry Breaking in Lean 4 and SystemVerilog.
asic fpga mathematics lean systemverilog icarus-verilog formal-verification electrodynamics formal-mathematics symmetry-breaking mathlib electromagnetic-wave maxwell-equations lean4 rtl-design-and-verification computational-research ai-assisted-research heaviside-functions zero-invariant-fields whittaker-potentials
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Aug 29, 2026 - Lean
Geometric Exclusion of Smooth Solutions to Navier-Stokes Equations at Stationary Right-Angles under No-Slip Boundary Conditions in Lean 4.
research math mathematics singularity differential-geometry partial-differential-equations navier-stokes formal-verification fluid-dynamics boundary-conditions mathlib navier-stokes-equations right-angle lean4 ai-assisted-research clay-mathematics-institute enstrophy-transport-equation no-slip millennium-prize-problem
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Aug 25, 2026 - Lean
Generative AI is the best research tool we have available today - it also messes up a lot. This harness consists of the deterministic controls to perform AI-assisted research quickly, accurately and honestly.
provenance open-science git-hooks reproducibility research-integrity claude-code ai-assisted-research
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Aug 3, 2026 - Python
Reproducible re-analysis on two human EPIC datasets asking whether partial epigenetic reprogramming reverts the causal-damage (DamAge) or the adaptive (AdaptAge) methylation layer — the two layers dissociate, and the dissociation replicates.
bioinformatics reproducible-research epigenetics dna-methylation open-research reprogramming epigenetic-clock aging-biology ai-assisted-research information-dynamics user-agency-substrate
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Jun 5, 2026 - Python
Research & reading marginalia — selective bilingual (EN/中文) AI-assisted research notes, each with full provenance: data source · initial prompt · date · model.
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Sep 7, 2026 - Python
Make academic field conventions explicit, comparable, and teachable — for researchers working across disciplines. Built for Claude Code.
academic-writing literature-review social-science cross-disciplinary research-tools skill-builder interdisciplinary-research claude-code ai-assisted-research
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Mar 20, 2026
NexMol is a desktop app for molecular visualization and AI-assisted structural analysis. It combines an interactive 3D viewer with a natural-language workflow, so users can explore structures, manage projects, and work with molecular data more efficiently in one place.
react bioinformatics chemistry structural-biology computational-biology biochemistry openai electron-app molecular-visualization molstar ai-assisted-research
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Mar 30, 2026 - TypeScript
Public front door to a one-person, AI-assisted interdisciplinary research program on information and its future-reachability — how reachability is created, stored, degraded, and repaired in physical, living, and cognitive systems.
physics complex-systems open-research continual-learning aging-biology interdisciplinary-research ai-assisted-research information-dynamics general-learning-machine user-agency-substrate theory-of-intelligence
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Jun 6, 2026
Evidence-governed research toolkit with Gauntlet process assurance and FOIL adaptive reasoning support.
evaluation verification reproducibility runtime-verification foil research-software metareasoning ai-assisted-research
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Sep 5, 2026 - Python
A foundational theory redefining "existence" as quantizable via constructive logic. Applicable to AI cognition, encryption, quantum memory, and beyond. 構成的論理により「存在」を量子化可能な単位として再定義。AI認知・暗号・量子記憶など幅広い応用を想定した基礎理論です。
mathematical-logic formal-proofs constructive-mathematics quantum-foundations philosophy-of-physics quantum-ontology future-theory existence-theory ai-assisted-research constructive-ai
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Jun 21, 2025
A claim-centric, temporally-aware LLM wiki for long-term scientific literature management.
knowledge-management scientific-literature llm ai-assisted-research research-workflow temporal-validity claim-centric epistemic-status
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Apr 18, 2026
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