SemDist

This is the development version of SemDist; for the stable release version, see SemDist.

Information Accretion-based Function Predictor Evaluation

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DOI: 10.18129/B9.bioc.SemDist

Bioconductor version: Development (3.23)

This package implements methods to calculate information accretion for a given version of the gene ontology and uses this data to calculate remaining uncertainty, misinformation, and semantic similarity for given sets of predicted annotations and true annotations from a protein function predictor.

Author: Ian Gonzalez and Wyatt Clark

Maintainer: Ian Gonzalez <gonzalez.isv at gmail.com>

Citation (from within R, enter citation("SemDist")):

Installation

To install this package, start R (version "4.6") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("SemDist")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SemDist")

introduction.pdf PDF R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Annotation, Classification, GO, Software

Version 1.45.0

In Bioconductor since BioC 3.0 (R-3.1) (11 years)

License GPL (>= 2)

Depends R (>= 3.1), AnnotationDbi, GO.db, annotate

Imports

System Requirements

URL http://github.com/iangonzalez/SemDist

Suggests GOSemSim

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package SemDist_1.45.0.tar.gz

Windows Binary (x86_64) SemDist_1.45.0.zip

macOS Binary (x86_64) SemDist_1.45.0.tgz

macOS Binary (arm64) SemDist_1.45.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/SemDist

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/SemDist

Bioc Package Browser https://code.bioconductor.org/browse/SemDist/

Package Short Url https://bioconductor.org/packages/SemDist/

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