GSEABase

This is the development version of GSEABase; for the stable release version, see GSEABase.

Gene set enrichment data structures and methods

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("GSEABase")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GSEABase")

Details

See More

Suggests hgu95av2.db, GO.db, org.Hs.eg.db, Rgraphviz, ReportingTools, testthat, BiocStyle, knitr, RUnit

Linking To

Enhances

Depends On Me AGDEX, BicARE, CCPROMISE, Cepo, cpvSNP, npGSEA, PROMISE, splineTimeR, TissueEnrich, GSVAdata, OSCA.basic

Imports Me AUCell, BioCor, canceR, Category, categoryCompare, cosmosR, dreamlet, EnrichmentBrowser, gep2pep, GlobalAncova, GmicR, GSRI, GSVA, mastR, miRSM, mogsa, oppar, PanomiR, phenoTest, PROMISE, ReportingTools, scTGIF, signatureSearch, singleCellTK, singscore, slalom, sparrow, TFutils, TMSig, vissE, zenith, msigdb, clustermole

Suggests Me BiocSet, epiregulon.extra, gage, globaltest, GOstats, GSAR, MAST, pathMED, phenoTest, BaseSet, evanverse

Links To Me

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Package Archives

Follow Installation instructions to use this package in your R session.