PanomiR

This is the development version of PanomiR; for the stable release version, see PanomiR.

Detection of miRNAs that regulate interacting groups of pathways

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DOI: 10.18129/B9.bioc.PanomiR

Bioconductor version: Development (3.23)

PanomiR is a package to detect miRNAs that target groups of pathways from gene expression data. This package provides functionality for generating pathway activity profiles, determining differentially activated pathways between user-specified conditions, determining clusters of pathways via the PCxN package, and generating miRNAs targeting clusters of pathways. These function can be used separately or sequentially to analyze RNA-Seq data.

Author: Pourya Naderi [aut, cre], Yue Yang (Alan) Teo [aut], Ilya Sytchev [aut], Winston Hide [aut]

Maintainer: Pourya Naderi <pouryany at gmail.com>

Citation (from within R, enter citation("PanomiR")):

Installation

To install this package, start R (version "4.6") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("PanomiR")

For older versions of R, please refer to the appropriate Bioconductor release.