To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("oneChannelGUI")

In most cases, you don't need to download the package archive at all.

oneChannelGUI

This package is for version 3.4 of Bioconductor; for the stable, up-to-date release version, see oneChannelGUI.

A graphical interface designed to facilitate analysis of microarrays and miRNA/RNA-seq data on laptops

Bioconductor version: 3.4

This package was developed to simplify the use of Bioconductor tools for beginners having limited or no experience in writing R code. This library provides a graphical interface for microarray gene and exon level analysis as well as miRNA/mRNA-seq data analysis

Author: Raffale A Calogero, Bioinformatics and Genomics Unit, Molecular Biotechnology Center, Torino (Italy)

Maintainer: Raffaele A Calogero <raffaele.calogero at unito.it>

Citation (from within R, enter citation("oneChannelGUI")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("oneChannelGUI")

Documentation

To view documentation for the version of this package installed in your system, start R and enter: 

browseVignettes("oneChannelGUI")
PDF R Script oneChannelGUI Installation
PDF oneChannelGUI microarray exon-level data analysis overview
PDF oneChannelGUI microarray gene-level data analysis overview
PDF oneChannelGUI miRNA and RNA-seq data analysis overview
PDF oneChannelGUI Stand Alone Functions
PDF Reference Manual
Text NEWS

Details

biocViews DataImport, DifferentialExpression, GUI, Microarray, MultipleComparison, OneChannel, Preprocessing, QualityControl, RNASeq, Sequencing, Software, StatisticalMethod
Version 1.40.0
In Bioconductor since BioC 2.0 (R-2.5) (10 years)
License Artistic-2.0
Depends Biobase, affylmGUI, tkrplot, tkWidgets, IRanges, Rsamtools(>= 1.13.1), Biostrings, siggenes, chimera
Imports
LinkingTo
Suggests annotate, genefilter, maSigPro, pamr, pdmclass, ChIPpeakAnno, chipseq, BSgenome, Rgraphviz, affy, annaffy, affyPLM, multtest, ssize, sizepower, RankProd, org.Hs.eg.db, org.Mm.eg.db, org.Rn.eg.db, edgeR, metaArray, MergeMaid, biomaRt, GenomeGraphs, AffyCompatible, rtracklayer, Genominator, EDASeq, limma, DESeq, DEXSeq, goseq, hugene10sttranscriptcluster.db, mogene10sttranscriptcluster.db, ragene10sttranscriptcluster.db, GOstats, AnnotationDbi, preprocessCore, baySeq, HuExExonProbesetLocation, MoExExonProbesetLocation, RaExExonProbesetLocation, snow, RmiR, RmiR.Hs.miRNA, BSgenome.Hsapiens.UCSC.hg19, R.utils, cummeRbund, BSgenome.Mmusculus.UCSC.mm9, BSgenome.Rnorvegicus.UCSC.rn4, DESeq2, GenomicAlignments, BiocParallel, KEGG.db, miRNApath, miRNAtap, miRNAtap.db
SystemRequirements
Enhances
URL http://www.bioinformatica.unito.it/oneChannelGUI/
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source oneChannelGUI_1.40.0.tar.gz
Windows Binary oneChannelGUI_1.40.0.zip
Mac OS X 10.9 (Mavericks) oneChannelGUI_1.40.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/oneChannelGUI/tree/release-3.4
Package Short Url http://bioconductor.org/packages/oneChannelGUI/
Package Downloads Report Download Stats

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