To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("affylmGUI")

In most cases, you don't need to download the package archive at all.

affylmGUI

This package is for version 3.4 of Bioconductor; for the stable, up-to-date release version, see affylmGUI.

GUI for limma package with Affymetrix microarrays

Bioconductor version: 3.4

A Graphical User Interface for analysis of Affymetrix microarray gene expression data using the affy and limma packages.

Author: James Wettenhall [aut], Ken Simpson [aut], Gordon Smyth [aut], Keith Satterley [ctb], Yifang Hu [ctb]

Maintainer: Yifang Hu <hu at wehi.edu.au>, Gordon Smyth <smyth at wehi.edu.au>, Keith Satterley <keith at wehi.edu.au>

Citation (from within R, enter citation("affylmGUI")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("affylmGUI")

Documentation

To view documentation for the version of this package installed in your system, start R and enter: 

browseVignettes("affylmGUI")
PDF R Script affylmGUI Vignette
PDF Extracting affy and limma objects from affylmGUI files
HTML about.html
HTML CustMenu.html
HTML index.html
HTML windowsFocus.html
PDF Reference Manual

Details

biocViews BatchEffect, Bayesian, DataImport, DifferentialExpression, GUI, GeneExpression, Microarray, MultipleComparison, Normalization, OneChannel, Preprocessing, ProprietaryPlatforms, QualityControl, Regression, Software, TimeCourse, Transcription, mRNAMicroarray
Version 1.48.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 12 years)
License GPL (>=2)
Depends
Imports limma, tcltk, affy, BiocInstaller, affyio, tkrplot, affyPLM, R2HTML, xtable, gcrma, AnnotationDbi
LinkingTo
Suggests
SystemRequirements
Enhances
URL http://bioinf.wehi.edu.au/affylmGUI/
Depends On Me oneChannelGUI
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source affylmGUI_1.48.0.tar.gz
Windows Binary affylmGUI_1.48.2.zip
Mac OS X 10.9 (Mavericks) affylmGUI_1.48.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/affylmGUI/tree/release-3.4
Package Short Url http://bioconductor.org/packages/affylmGUI/
Package Downloads Report Download Stats

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