PING

This package is for version 3.21 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see PING.

Probabilistic inference for Nucleosome Positioning with MNase-based or Sonicated Short-read Data

DOI: 10.18129/B9.bioc.PING

Bioconductor version: 3.21

Probabilistic inference of ChIP-Seq using an empirical Bayes mixture model approach.

Author: Xuekui Zhang <xuezhang at jhsph.edu>, Raphael Gottardo <rgottard at fredhutch.org>, Sangsoon Woo <swoo at fhcrc.org>

Maintainer: Renan Sauteraud <renan.sauteraud at gmail.com>

Citation (from within R, enter citation("PING")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("PING")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Clustering, Sequencing, Software, StatisticalMethod, Visualization

Version 2.51.0

In Bioconductor since BioC 2.10 (R-2.15) (13.5 years)

License Artistic-2.0

Depends R (>= 3.5.0)

Imports methods, PICS, graphics, grDevices, stats, Gviz, fda, BSgenome, stats4, BiocGenerics, IRanges, GenomicRanges, S4Vectors

System Requirements

URL

Suggests parallel, ShortRead, rtracklayer

Linking To

Enhances

Depends On Me

Imports Me

Suggests Me

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package PING_2.51.0.tar.gz

Windows Binary (x86_64)

macOS Binary (x86_64)

macOS Binary (arm64)

Source Repository git clone https://git.bioconductor.org/packages/PING

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/PING

Bioc Package Browser https://code.bioconductor.org/browse/PING/

Package Short Url https://bioconductor.org/packages/PING/

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