PICS

This package is for version 3.21 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see PICS.

Probabilistic inference of ChIP-seq

DOI: 10.18129/B9.bioc.PICS

Bioconductor version: 3.21

Probabilistic inference of ChIP-Seq using an empirical Bayes mixture model approach.

Author: Xuekui Zhang <xzhang at stat.ubc.ca>, Raphael Gottardo <rgottard at fhcrc.org>

Maintainer: Renan Sauteraud <renan.sauteraud at gmail.com>

Citation (from within R, enter citation("PICS")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("PICS")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("PICS")

The PICS users guide HTML R Script

Reference Manual PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews ChIPseq, Clustering, Sequencing, Software, Visualization

Version 2.51.0

In Bioconductor since BioC 2.6 (R-2.11) (15.5 years)

License Artistic-2.0

Depends R (>= 3.0.0)

Imports utils, stats, graphics, grDevices, methods, IRanges, GenomicRanges, Rsamtools, GenomicAlignments

System Requirements

URL https://github.com/SRenan/PICS

Bug Reports https://github.com/SRenan/PICS/issues

Suggests rtracklayer, parallel, knitr

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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package PICS_2.51.0.tar.gz

Windows Binary (x86_64)

macOS Binary (x86_64)

macOS Binary (arm64)

Source Repository git clone https://git.bioconductor.org/packages/PICS

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/PICS

Bioc Package Browser https://code.bioconductor.org/browse/PICS/

Package Short Url https://bioconductor.org/packages/PICS/

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