PING
This package is for version 3.20 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see PING.
Probabilistic inference for Nucleosome Positioning with MNase-based or Sonicated Short-read Data
Bioconductor version: 3.20
Probabilistic inference of ChIP-Seq using an empirical Bayes mixture model approach.
Author: Xuekui Zhang <xuezhang at jhsph.edu>, Raphael Gottardo <rgottard at fredhutch.org>, Sangsoon Woo <swoo at fhcrc.org>
Maintainer: Renan Sauteraud <renan.sauteraud at gmail.com>
Citation (from within R, enter
citation("PING")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("PING")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
Reference Manual
PDF
NEWS
Text
Details
Version
2.50.0
In Bioconductor since
BioC 2.10 (R-2.15) (13 years)
License
Artistic-2.0
Depends
R (>= 3.5.0)
Imports
methods, PICS, graphics, grDevices, stats, Gviz, fda, BSgenome, stats4, BiocGenerics, IRanges, GenomicRanges, S4Vectors
System Requirements
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Suggests
parallel, ShortRead, rtracklayer
Linking To
Enhances
Depends On Me
Imports Me
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Links To Me
Build Report
Build Report
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package
PING_2.50.0.tar.gz
Windows Binary (x86_64)
PING_2.50.0.zip (64-bit only)
macOS Binary (x86_64)
PING_2.50.0.tgz
macOS Binary (arm64)
PING_2.50.0.tgz
Source Repository
git clone https://git.bioconductor.org/packages/PING
Source Repository (Developer Access)
git clone git@git.bioconductor.org:packages/PING
Bioc Package Browser
https://code.bioconductor.org/browse/PING/
Package Short Url
https://bioconductor.org/packages/PING/
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