annotate
This package is for version 3.2 of Bioconductor;
for the stable, up-to-date release version, see
annotate.
Annotation for microarrays
Bioconductor version: 3.2
Using R enviroments for annotation.
Author: R. Gentleman
Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>
Citation (from within R,
enter citation("annotate")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("annotate")
Documentation
To view documentation for the version of this package installed
in your system, start R and enter:
browseVignettes("annotate")
PDF
HowTo: Get HTML Output
PDF
HowTo: use chromosomal information
PDF
HOWTO: Use the online query tools
PDF
Using Affymetrix Probe Level Data
PDF
Using the homology package
Details
Version
1.48.0
In Bioconductor since
BioC 1.6 (R-2.1) or earlier (> 11 years)
License
Artistic-2.0
LinkingTo
Suggests
hgu95av2.db,
genefilter,
Biostrings(>= 2.25.10),
rae230a.db,
rae230aprobe,
tkWidgets,
GO.db,
org.Hs.eg.db,
org.Mm.eg.db,
hom.Hs.inp.db,
humanCHRLOC,
Rgraphviz,
RUnit
SystemRequirements
Enhances
Depends On Me
ChromHeatMap,
GeneAnswers,
geneplotter,
GOSim,
GSEABase,
idiogram,
macat,
MGFM,
MineICA,
MLInterfaces,
Neve2006,
PCpheno,
phenoTest,
PREDA,
PREDAsampledata,
RpsiXML,
ScISI,
SemDist
Imports Me
CAFE,
Category,
categoryCompare,
codelink,
DOQTL,
DrugVsDisease,
facopy,
gCMAP,
gCMAPWeb,
GeneAnswers,
genefilter,
GlobalAncova,
globaltest,
GOstats,
lumi,
methyAnalysis,
methylumi,
mvGST,
phenoTest,
qpgraph,
ReportingTools,
ScISI,
splicegear,
systemPipeR,
tigre
Suggests Me
adme16cod.db,
ag.db,
ath1121501.db,
BiocCaseStudies,
BiocGenerics,
biomaRt,
bovine.db,
canine.db,
canine2.db,
celegans.db,
chicken.db,
drosgenome1.db,
drosophila2.db,
ecoli2.db,
GenomicRanges,
GGHumanMethCancerPanelv1.db,
GlobalAncova,
GOstats,
GSAR,
GSEAlm,
h10kcod.db,
h20kcod.db,
hcg110.db,
hgfocus.db,
hgu133a.db,
hgu133a2.db,
hgu133b.db,
hgu133plus2.db,
hgu219.db,
hgu95a.db,
hgu95av2.db,
hgu95b.db,
hgu95c.db,
hgu95d.db,
hgu95e.db,
hguatlas13k.db,
hgubeta7.db,
hguDKFZ31.db,
hgug4100a.db,
hgug4101a.db,
hgug4110b.db,
hgug4111a.db,
hgug4112a.db,
hgug4845a.db,
hguqiagenv3.db,
hi16cod.db,
hs25kresogen.db,
Hs6UG171.db,
HsAgilentDesign026652.db,
hta20stprobeset.db,
hta20sttranscriptcluster.db,
hthgu133a.db,
hthgu133b.db,
hu35ksuba.db,
hu35ksubb.db,
hu35ksubc.db,
hu35ksubd.db,
hu6800.db,
huex10stprobeset.db,
huex10sttranscriptcluster.db,
hugene10stprobeset.db,
hugene10sttranscriptcluster.db,
hugene11stprobeset.db,
hugene11sttranscriptcluster.db,
hugene20stprobeset.db,
hugene20sttranscriptcluster.db,
hugene21stprobeset.db,
hugene21sttranscriptcluster.db,
HuO22.db,
hwgcod.db,
IlluminaHumanMethylation27k.db,
IlluminaHumanMethylation450k.db,
illuminaHumanv1.db,
illuminaHumanv2.db,
illuminaHumanv2BeadID.db,
illuminaHumanv3.db,
illuminaHumanv4.db,
illuminaHumanWGDASLv3.db,
illuminaHumanWGDASLv4.db,
illuminaMousev1.db,
illuminaMousev1p1.db,
illuminaMousev2.db,
illuminaRatv1.db,
indac.db,
JazaeriMetaData.db,
LAPOINTE.db,
lumiHumanAll.db,
lumiMouseAll.db,
lumiRatAll.db,
m10kcod.db,
m20kcod.db,
maigesPack,
metagenomeSeq,
mgu74a.db,
mgu74av2.db,
mgu74b.db,
mgu74bv2.db,
mgu74c.db,
mgu74cv2.db,
mguatlas5k.db,
mgug4104a.db,
mgug4120a.db,
mgug4121a.db,
mgug4122a.db,
mi16cod.db,
MLP,
mm24kresogen.db,
MmAgilentDesign026655.db,
moe430a.db,
moe430b.db,
moex10stprobeset.db,
moex10sttranscriptcluster.db,
mogene10stprobeset.db,
mogene10sttranscriptcluster.db,
mogene11stprobeset.db,
mogene11sttranscriptcluster.db,
mogene20stprobeset.db,
mogene20sttranscriptcluster.db,
mogene21stprobeset.db,
mogene21sttranscriptcluster.db,
mouse4302.db,
mouse430a2.db,
mpedbarray.db,
mta10stprobeset.db,
mta10sttranscriptcluster.db,
mu11ksuba.db,
mu11ksubb.db,
Mu15v1.db,
mu19ksuba.db,
mu19ksubb.db,
mu19ksubc.db,
Mu22v3.db,
mwgcod.db,
Norway981.db,
nugohs1a520180.db,
nugomm1a520177.db,
oneChannelGUI,
OperonHumanV3.db,
org.Ag.eg.db,
org.At.tair.db,
org.Bt.eg.db,
org.Ce.eg.db,
org.Cf.eg.db,
org.Dm.eg.db,
org.Dr.eg.db,
org.EcK12.eg.db,
org.EcSakai.eg.db,
org.Gg.eg.db,
org.Hs.eg.db,
org.Mm.eg.db,
org.Mmu.eg.db,
org.Pf.plasmo.db,
org.Pt.eg.db,
org.Rn.eg.db,
org.Sc.sgd.db,
org.Sco.eg.db,
org.Ss.eg.db,
org.Tgondii.eg.db,
org.Xl.eg.db,
PartheenMetaData.db,
pedbarrayv10.db,
pedbarrayv9.db,
POCRCannotation.db,
porcine.db,
puma,
r10kcod.db,
rae230a.db,
rae230b.db,
raex10stprobeset.db,
raex10sttranscriptcluster.db,
ragene10stprobeset.db,
ragene10sttranscriptcluster.db,
ragene11stprobeset.db,
ragene11sttranscriptcluster.db,
ragene20stprobeset.db,
ragene20sttranscriptcluster.db,
ragene21stprobeset.db,
ragene21sttranscriptcluster.db,
rat2302.db,
rgu34a.db,
rgu34b.db,
rgu34c.db,
rguatlas4k.db,
rgug4105a.db,
rgug4130a.db,
rgug4131a.db,
ri16cod.db,
RnAgilentDesign028282.db,
RnBeads,
rnu34.db,
Roberts2005Annotation.db,
rtu34.db,
rwgcod.db,
SHDZ.db,
siggenes,
SummarizedExperiment,
u133x3p.db,
xlaevis.db,
yeast2.db,
ygs98.db,
zebrafish.db
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