To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("globaltest")

In most cases, you don't need to download the package archive at all.

globaltest

This package is for version 3.2 of Bioconductor; for the stable, up-to-date release version, see globaltest.

Testing Groups of Covariates/Features for Association with a Response Variable, with Applications to Gene Set Testing

Bioconductor version: 3.2

The global test tests groups of covariates (or features) for association with a response variable. This package implements the test with diagnostic plots and multiple testing utilities, along with several functions to facilitate the use of this test for gene set testing of GO and KEGG terms.

Author: Jelle Goeman and Jan Oosting, with contributions by Livio Finos and Aldo Solari

Maintainer: Jelle Goeman <jelle.goeman at radboudumc.nl>

Citation (from within R, enter citation("globaltest")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("globaltest")

Documentation

To view documentation for the version of this package installed in your system, start R and enter: 

browseVignettes("globaltest")
PDF Global Test
PDF Reference Manual

Details

biocViews Bioinformatics, DifferentialExpression, GO, Microarray, OneChannel, Pathways, Software
Version 5.24.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 11 years)
License GPL (>= 2)
Depends methods, survival
Imports Biobase, AnnotationDbi, annotate, graphics
LinkingTo
Suggests vsn, golubEsets, KEGG.db, hu6800.db, Rgraphviz, GO.db, lungExpression, org.Hs.eg.db, GSEABase, penalized, gss, MASS, boot, rpart
SystemRequirements
Enhances
URL
Depends On Me GlobalAncova
Imports Me BiSeq, SIM
Suggests Me topGO
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source globaltest_5.24.0.tar.gz
Windows Binary globaltest_5.24.0.zip
Mac OS X 10.6 (Snow Leopard) globaltest_5.24.0.tgz
Mac OS X 10.9 (Mavericks) globaltest_5.24.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/globaltest/tree/release-3.2
Package Short Url http://bioconductor.org/packages/globaltest/
Package Downloads Report Download Stats

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