eQTL
This package is for version 3.12 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see eQTL.
Cloud-enabled cis-eQTL searches with Bioconductor GGtools 5.x
Bioconductor version: 3.12
This workflow focuses on searches for eQTL in cis, so that DNA variants local to the gene assayed for expression are tested for association.
Author: Vincent Carey [aut, cre]
Maintainer: Vincent Carey <stvjc at channing.harvard.edu>
Citation (from within R, enter
citation("eQTL")):
Installation
To install this package, start R (version "4.0") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("eQTL")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("eQTL")
Details
biocViews
GenomicVariantsWorkflow, Workflow
Version
1.14.0
License
Artistic-2.0
Depends
R (>= 3.3.0), GGdata, GGtools, GenomeInfoDb, S4Vectors, SNPlocs.Hsapiens.dbSNP144.GRCh37, bibtex, biglm, data.table, doParallel, foreach, knitcitations, lumi, lumiHumanAll.db, parallel, rmeta, scatterplot3d, snpStats, grid, yri1kgv
Imports
System Requirements
See More
Suggests
knitr, rmarkdown, BiocStyle
Linking To
Enhances
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Package Archives
Follow Installation instructions to use this package in your R session.
Source Package
eQTL_1.14.0.tar.gz
Windows Binary
Source Repository
git clone https://git.bioconductor.org/packages/eQTL
Source Repository (Developer Access)
git clone git@git.bioconductor.org:packages/eQTL
Package Short Url
https://bioconductor.org/packages/eQTL/
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