GGdata

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.12 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see GGdata.

all 90 hapmap CEU samples, 47K expression, 4mm SNP

DOI: 10.18129/B9.bioc.GGdata

Bioconductor version: 3.12

data exemplars dealing with hapmap SNP reports, GWAS, etc.

Author: VJ Carey <stvjc at channing.harvard.edu>

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("GGdata")):

Installation

To install this package, start R (version "4.0") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("GGdata")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews ExperimentData, Genome, HapMap, MicroarrayData, SNPData, SequencingData

Version 1.28.0

License LGPL

Depends R (>= 2.12.0), methods, Biobase(>= 2.5.5), GGBase, snpStats, illuminaHumanv1.db, AnnotationDbi

Imports

System Requirements

URL

Suggests

Linking To

Enhances GGtools

Depends On Me eQTL

Imports Me

Suggests Me crlmm, GGtools

Links To Me

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package GGdata_1.28.0.tar.gz

Windows Binary

macOS 10.13 (High Sierra)

Source Repository git clone https://git.bioconductor.org/packages/GGdata

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/GGdata

Package Short Url https://bioconductor.org/packages/GGdata/

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