PCpheno

This package is for version 3.12 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see PCpheno.

Phenotypes and cellular organizational units

DOI: 10.18129/B9.bioc.PCpheno

Bioconductor version: 3.12

Tools to integrate, annotate, and link phenotypes to cellular organizational units such as protein complexes and pathways.

Author: Nolwenn Le Meur and Robert Gentleman

Maintainer: Nolwenn Le Meur <nlemeur at gmail.com>

Citation (from within R, enter citation("PCpheno")):

Installation

To install this package, start R (version "4.0") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("PCpheno")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("PCpheno")

PCpheno Vignette PDF R Script

Reference Manual PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews GraphAndNetwork, Network, Proteomics, Software

Version 1.52.0

In Bioconductor since BioC 2.2 (R-2.7) (16 years)

License Artistic-2.0

Depends R (>= 2.10), Category, ScISI(>= 1.3.0), SLGI, ppiStats, ppiData, annotate(>= 1.17.4)

Imports AnnotationDbi, Biobase, Category, GO.db, graph, graphics, GSEABase, KEGG.db, methods, ScISI, stats, stats4

System Requirements

URL

Suggests KEGG.db, GO.db, org.Sc.sgd.db

Linking To

Enhances

Depends On Me

Imports Me

Suggests Me

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package PCpheno_1.52.0.tar.gz

Windows Binary PCpheno_1.52.0.zip

macOS 10.13 (High Sierra) PCpheno_1.52.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/PCpheno

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/PCpheno

Bioc Package Browser https://code.bioconductor.org/browse/PCpheno/

Package Short Url https://bioconductor.org/packages/PCpheno/

Package Downloads Report Download Stats

Old Source Packages for BioC 3.12 Source Archive