GSEABase

This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see GSEABase.

Gene set enrichment data structures and methods

Installation

To install this package, start R (version "4.0") and enter:

if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("GSEABase")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GSEABase")

Details

See More

Suggests hgu95av2.db, GO.db, org.Hs.eg.db, Rgraphviz, ReportingTools, testthat, BiocStyle, knitr

Linking To

Enhances

Depends On Me AGDEX, BicARE, CCPROMISE, cpvSNP, GSVAdata, npGSEA, PROMISE, splineTimeR, TissueEnrich

Imports Me AUCell, BioCor, canceR, Category, categoryCompare, cellHTS2, EnrichmentBrowser, escape, gep2pep, GISPA, GlobalAncova, GmicR, GSRI, GSVA, MIGSA, miRSM, mogsa, oppar, PCpheno, phenoTest, POST, PROMISE, RcisTarget, ReportingTools, scTGIF, signatureSearch, singleCellTK, singscore, SingscoreAMLMutations, slalom, TFutils

Suggests Me BiocCaseStudies, BiocSet, gage, globaltest, GOstats, GSAR, GSEAlm, MAST, PGSEA, phenoTest, TFEA.ChIP

Links To Me

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Package Archives

Follow Installation instructions to use this package in your R session.