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BSgenome.Hsapiens.UCSC.hg19

BSgenome.Hsapiens.UCSC.hg19

This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see BSgenome.Hsapiens.UCSC.hg19.

Full genome sequences for Homo sapiens (UCSC version hg19)

DOI: 10.18129/B9.bioc.BSgenome.Hsapiens.UCSC.hg19

Bioconductor version: 3.10

Full genome sequences for Homo sapiens (Human) as provided by UCSC (hg19, Feb. 2009) and stored in Biostrings objects.

Author: The Bioconductor Dev Team

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("BSgenome.Hsapiens.UCSC.hg19")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("BSgenome.Hsapiens.UCSC.hg19")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews AnnotationData, BSgenome, Genetics, Homo_sapiens

Version 1.4.0

License Artistic-2.0

Depends BSgenome(>= 1.33.5)

Imports BSgenome

System Requirements

URL

See More

Suggests TxDb.Hsapiens.UCSC.hg19.knownGene

Linking To

Enhances

Depends On Me annotation, BSgenome.Hsapiens.UCSC.hg19.masked, chimera, CODEX, motifRG, sequencing, traseR, variants

Imports Me appreci8R, brainflowprobes, BSgenome.Hsapiens.UCSC.hg19.masked, ChIPComp, circRNAprofiler, decompTumor2Sig, HiLDA, MADSEQ, RareVariantVis, RCAS, TCGAWorkflow, trena

Suggests Me AneuFinder, ArrayTV, ATACseqQC, BadRegionFinder, Basic4Cseq, BBCAnalyzer, biovizBase, ChIPpeakAnno, chromVAR, CNEr, CNVfilteR, CRISPRseek, customProDB, DNAshapeR, esATAC, FDb.FANTOM4.promoters.hg19, FDb.UCSC.snp135common.hg19, FDb.UCSC.snp137common.hg19, gcapc, GenomicAlignments, GenomicFeatures, GenomicRanges, GenomicScores, GenVisR, ggbio, gmapR, GUIDEseq, Gviz, h5vc, InPAS, IntEREst, IsoformSwitchAnalyzeR, karyoploteR, MEDIPS, MinimumDistance, MiRaGE, motifbreakR, motifmatchr, MutationalPatterns, ORFik, OrganismDbi, PGA, plyranges, qsea, R453Plus1Toolbox, Rariant, REMP, rGADEM, RiboProfiling, Rsamtools, RSVSim, rtracklayer, SGSeq, signeR, SigsPack, SNPlocs.Hsapiens.dbSNP.20101109, SNPlocs.Hsapiens.dbSNP.20120608, SNPlocs.Hsapiens.dbSNP142.GRCh37, SNPlocs.Hsapiens.dbSNP144.GRCh37, StructuralVariantAnnotation, VariantAnnotation, wavClusteR, XtraSNPlocs.Hsapiens.dbSNP144.GRCh37, YAPSA

Links To Me

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package BSgenome.Hsapiens.UCSC.hg19_1.4.0.tar.gz

Windows Binary

Mac OS X 10.11 (El Capitan)

Package Short Url https://bioconductor.org/packages/BSgenome.Hsapiens.UCSC.hg19/

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