h5vc
This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see h5vc.
Managing alignment tallies using a hdf5 backend
Bioconductor version: 3.10
This package contains functions to interact with tally data from NGS experiments that is stored in HDF5 files.
Author: Paul Theodor Pyl
Maintainer: Paul Theodor Pyl <paul.theodor.pyl at gmail.com>
Citation (from within R, enter
citation("h5vc")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("h5vc")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("h5vc") Reference Manual
PDF
Details
biocViews
Software
Version
2.20.0
In Bioconductor since
BioC 2.13 (R-3.0) (10.5 years)
License
GPL (>= 3)
Depends
grid, gridExtra, ggplot2
Imports
rhdf5, reshape, S4Vectors, IRanges, Biostrings, Rsamtools(>= 1.99.1), methods, GenomicRanges, abind, BiocParallel, BatchJobs, h5vcData, GenomeInfoDb
System Requirements
GNU make
See More
Suggests
knitr, locfit, BSgenome.Hsapiens.UCSC.hg19, biomaRt, BSgenome.Hsapiens.NCBI.GRCh38, RUnit, BiocGenerics
Linking To
Rhtslib(>= 1.15.3)
Enhances
Depends On Me
Imports Me
Suggests Me
h5vcData
Links To Me
Build Report
Build Report
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package
h5vc_2.20.0.tar.gz
Windows Binary
h5vc_2.20.0.zip
Mac OS X 10.11 (El Capitan)
h5vc_2.20.0.tgz
Source Repository
git clone https://git.bioconductor.org/packages/h5vc
Source Repository (Developer Access)
git clone git@git.bioconductor.org:packages/h5vc
Bioc Package Browser
https://code.bioconductor.org/browse/h5vc/
Package Short Url
https://bioconductor.org/packages/h5vc/
Package Downloads Report
Download Stats
Old Source Packages for BioC 3.10
Source Archive