siggenes

Multiple testing using SAM and Efron's empirical Bayes approaches

Bioconductor version: 2.7

Identification of differentially expressed genes and estimation of the False Discovery Rate (FDR) using both the Significance Analysis of Microarrays (SAM) and the Empirical Bayes Analyses of Microarrays (EBAM).

Author: Holger Schwender

Maintainer: Holger Schwender <holger.schw at gmx.de>

To install this package, start R and enter:

 source("http://bioconductor.org/biocLite.R")
 biocLite("siggenes")

To cite this package in a publication, start R and enter:

 citation("siggenes")

Documentation

PDF R Script siggenes Manual
PDF siggenesRnews.pdf
PDF Reference Manual

Details

biocViews Statistics, MultipleComparisons, Microarray, GeneExpression, SNP, ExonArray, DifferentialExpression
Depends methods, multtest, Biobase, splines
Imports
Suggests affy, annotate, genefilter, KernSmooth, scrime (>= 1.1.2)
System Requirements
License LGPL (>= 2)
URL
Depends On Me KCsmart
Imports Me charm
Suggests Me GeneSelector, logicFS, oneChannelGUI, XDE
Version 1.24.0
Since Bioconductor 1.6 (R-2.1) or earlier

Package Downloads

Package Source siggenes_1.24.0.tar.gz
Windows Binary siggenes_1.24.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary siggenes_1.24.0.tgz
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