annotate
Annotation for microarrays
Bioconductor version: 2.7
Using R enviroments for annotation.
Author: R. Gentleman
Maintainer: Biocore Team c/o BioC user list <bioconductor at stat.math.ethz.ch>
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("annotate")
To cite this package in a publication, start R and enter:
citation("annotate")
Documentation
Details
Suggests
Biobase,
hgu95av2.db,
genefilter,
Biostrings(>= 2.4.4),
rae230a.db,
rae230aprobe,
tkWidgets,
XML (>= 0.92-2),
GO.db,
org.Hs.eg.db,
org.Mm.eg.db,
hom.Hs.inp.db
System Requirements
License
Artistic-2.0
Depends On Me
Agi4x44PreProcess,
ChromHeatMap,
GeneAnswers,
geneplotter,
GGtools,
GSEABase,
idiogram,
macat,
MLInterfaces,
Neve2006,
ontoTools,
PCpheno,
RpsiXML,
safe,
ScISI
Imports Me
affycoretools,
Category,
ChromHeatMap,
codelink,
GeneAnswers,
genefilter,
geneplotter,
GlobalAncova,
globaltest,
GOstats,
GSEABase,
lumi,
qpgraph,
safe,
ScISI,
splicegear,
tigre
Suggests Me
adme16cod.db,
ag.db,
ath1121501.db,
BiocCaseStudies,
biomaRt,
bovine.db,
canine.db,
canine2.db,
celegans.db,
chicken.db,
drosgenome1.db,
drosophila2.db,
ecoli2.db,
geneplotter,
GGHumanMethCancerPanelv1.db,
GlobalAncova,
globaltest,
GOstats,
GSEAlm,
h10kcod.db,
h20kcod.db,
hcg110.db,
hgfocus.db,
hgu133a.db,
hgu133a2.db,
hgu133b.db,
hgu133plus2.db,
hgu219.db,
hgu95a.db,
hgu95av2.db,
hgu95b.db,
hgu95c.db,
hgu95d.db,
hgu95e.db,
hguatlas13k.db,
hgubeta7.db,
hguDKFZ31.db,
hgug4100a.db,
hgug4101a.db,
hgug4110b.db,
hgug4111a.db,
hgug4112a.db,
hguqiagenv3.db,
hi16cod.db,
hs25kresogen.db,
Hs6UG171.db,
HsAgilentDesign026652.db,
hthgu133a.db,
hthgu133b.db,
hu35ksuba.db,
hu35ksubb.db,
hu35ksubc.db,
hu35ksubd.db,
hu6800.db,
hugene10stprobeset.db,
hugene10sttranscriptcluster.db,
hugene11stprobeset.db,
hugene11sttranscriptcluster.db,
HuO22.db,
hwgcod.db,
illuminaHumanDASLBeadID.db,
IlluminaHumanMethylation27k.db,
illuminaHumanv1.db,
illuminaHumanv1BeadID.db,
illuminaHumanv2.db,
illuminaHumanv2BeadID.db,
illuminaHumanv3.db,
illuminaHumanv3BeadID.db,
illuminaHumanv4.db,
illuminaHumanv4BeadID.db,
illuminaMousev1.db,
illuminaMousev1BeadID.db,
illuminaMousev1p1.db,
illuminaMousev1p1BeadID.db,
illuminaMousev2.db,
illuminaMousev2BeadID.db,
illuminaRatv1.db,
illuminaRatv1BeadID.db,
indac.db,
JazaeriMetaData.db,
LAPOINTE.db,
lumiHumanAll.db,
lumiMouseAll.db,
lumiRatAll.db,
m10kcod.db,
m20kcod.db,
maigesPack,
mgu74a.db,
mgu74av2.db,
mgu74b.db,
mgu74bv2.db,
mgu74c.db,
mgu74cv2.db,
mguatlas5k.db,
mgug4104a.db,
mgug4120a.db,
mgug4121a.db,
mgug4122a.db,
mi16cod.db,
mm24kresogen.db,
MmAgilentDesign026655.db,
moe430a.db,
moe430b.db,
mogene10stprobeset.db,
mogene10sttranscriptcluster.db,
mogene11stprobeset.db,
mogene11sttranscriptcluster.db,
mouse4302.db,
mouse430a2.db,
mpedbarray.db,
mu11ksuba.db,
mu11ksubb.db,
Mu15v1.db,
mu19ksuba.db,
mu19ksubb.db,
mu19ksubc.db,
Mu22v3.db,
mwgcod.db,
Norway981.db,
nugohs1a520180.db,
nugomm1a520177.db,
oneChannelGUI,
OperonHumanV3.db,
org.Ag.eg.db,
org.At.tair.db,
org.Bt.eg.db,
org.Ce.eg.db,
org.Cf.eg.db,
org.Dm.eg.db,
org.Dr.eg.db,
org.EcK12.eg.db,
org.EcSakai.eg.db,
org.Gg.eg.db,
org.Hs.eg.db,
org.Mm.eg.db,
org.Mmu.eg.db,
org.Pf.plasmo.db,
org.Pt.eg.db,
org.Rn.eg.db,
org.Sc.sgd.db,
org.Sco.eg.db,
org.Ss.eg.db,
org.Xl.eg.db,
PartheenMetaData.db,
pedbarrayv10.db,
pedbarrayv9.db,
POCRCannotation.db,
porcine.db,
puma,
r10kcod.db,
rae230a.db,
rae230b.db,
ragene10stprobeset.db,
ragene10sttranscriptcluster.db,
ragene11stprobeset.db,
ragene11sttranscriptcluster.db,
rat2302.db,
rgu34a.db,
rgu34b.db,
rgu34c.db,
rguatlas4k.db,
rgug4105a.db,
rgug4130a.db,
rgug4131a.db,
ri16cod.db,
RnAgilentDesign028282.db,
rnu34.db,
Roberts2005Annotation.db,
rtu34.db,
rwgcod.db,
SHDZ.db,
siggenes,
tigre,
u133x3p.db,
xlaevis.db,
yeast2.db,
ygs98.db,
zebrafish.db
Version
1.28.1
Since
Bioconductor 1.6 (R-2.1) or earlier
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