annotate
This package is for version 2.11 of Bioconductor;
for the stable, up-to-date release version, see
annotate.
Annotation for microarrays
Bioconductor version: 2.11
Using R enviroments for annotation.
Author: R. Gentleman
Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>
Citation (from within R,
enter citation("annotate")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("annotate")
Documentation
To view documentation for the version of this package installed
in your system, start R and enter:
browseVignettes("annotate")
Details
Version
1.36.0
In Bioconductor since
BioC 1.6 (R-2.1) or earlier (> 11 years)
License
Artistic-2.0
LinkingTo
Suggests
Biobase,
hgu95av2.db,
genefilter,
Biostrings(>= 2.25.10),
rae230a.db,
rae230aprobe,
tkWidgets,
GO.db,
org.Hs.eg.db,
XML (>= 0.92-2),
org.Mm.eg.db,
hom.Hs.inp.db,
humanCHRLOC,
Rgraphviz,
RUnit
SystemRequirements
Enhances
Depends On Me
Agi4x44PreProcess,
ChromHeatMap,
GeneAnswers,
geneplotter,
GSEABase,
idiogram,
macat,
MLInterfaces,
Neve2006,
PCpheno,
phenoTest,
PREDA,
PREDAsampledata,
RpsiXML,
safe,
ScISI
Imports Me
affycoretools,
Category,
categoryCompare,
ChromHeatMap,
codelink,
gCMAP,
GeneAnswers,
genefilter,
GeneGroupAnalysis,
geneplotter,
GlobalAncova,
globaltest,
GOstats,
GSEABase,
lumi,
methyAnalysis,
methylumi,
phenoTest,
qpgraph,
ReportingTools,
safe,
ScISI,
splicegear,
tigre
Suggests Me
adme16cod.db,
ag.db,
ath1121501.db,
BiocCaseStudies,
biomaRt,
bovine.db,
canine.db,
canine2.db,
celegans.db,
chicken.db,
drosgenome1.db,
drosophila2.db,
ecoli2.db,
geneplotter,
GGHumanMethCancerPanelv1.db,
GlobalAncova,
globaltest,
GOstats,
GSEAlm,
h10kcod.db,
h20kcod.db,
hcg110.db,
hgfocus.db,
hgu133a.db,
hgu133a2.db,
hgu133b.db,
hgu133plus2.db,
hgu219.db,
hgu95a.db,
hgu95av2.db,
hgu95b.db,
hgu95c.db,
hgu95d.db,
hgu95e.db,
hguatlas13k.db,
hgubeta7.db,
hguDKFZ31.db,
hgug4100a.db,
hgug4101a.db,
hgug4110b.db,
hgug4111a.db,
hgug4112a.db,
hgug4845a.db,
hguqiagenv3.db,
hi16cod.db,
hs25kresogen.db,
Hs6UG171.db,
HsAgilentDesign026652.db,
hthgu133a.db,
hthgu133b.db,
hu35ksuba.db,
hu35ksubb.db,
hu35ksubc.db,
hu35ksubd.db,
hu6800.db,
hugene10stprobeset.db,
hugene10sttranscriptcluster.db,
hugene11stprobeset.db,
hugene11sttranscriptcluster.db,
HuO22.db,
hwgcod.db,
IlluminaHumanMethylation27k.db,
IlluminaHumanMethylation450k.db,
illuminaHumanv1.db,
illuminaHumanv2.db,
illuminaHumanv2BeadID.db,
illuminaHumanv3.db,
illuminaHumanv4.db,
illuminaHumanWGDASLv3.db,
illuminaHumanWGDASLv4.db,
illuminaMousev1.db,
illuminaMousev1p1.db,
illuminaMousev2.db,
illuminaRatv1.db,
indac.db,
JazaeriMetaData.db,
LAPOINTE.db,
lumiHumanAll.db,
lumiMouseAll.db,
lumiRatAll.db,
m10kcod.db,
m20kcod.db,
maigesPack,
mgu74a.db,
mgu74av2.db,
mgu74b.db,
mgu74bv2.db,
mgu74c.db,
mgu74cv2.db,
mguatlas5k.db,
mgug4104a.db,
mgug4120a.db,
mgug4121a.db,
mgug4122a.db,
mi16cod.db,
MLP,
mm24kresogen.db,
MmAgilentDesign026655.db,
moe430a.db,
moe430b.db,
mogene10stprobeset.db,
mogene10sttranscriptcluster.db,
mogene11stprobeset.db,
mogene11sttranscriptcluster.db,
mouse4302.db,
mouse430a2.db,
mpedbarray.db,
mu11ksuba.db,
mu11ksubb.db,
Mu15v1.db,
mu19ksuba.db,
mu19ksubb.db,
mu19ksubc.db,
Mu22v3.db,
mwgcod.db,
Norway981.db,
nugohs1a520180.db,
nugomm1a520177.db,
oneChannelGUI,
OperonHumanV3.db,
org.Ag.eg.db,
org.At.tair.db,
org.Bt.eg.db,
org.Ce.eg.db,
org.Cf.eg.db,
org.Dm.eg.db,
org.Dr.eg.db,
org.EcK12.eg.db,
org.EcSakai.eg.db,
org.Gg.eg.db,
org.Hs.eg.db,
org.Mm.eg.db,
org.Mmu.eg.db,
org.Pf.plasmo.db,
org.Pt.eg.db,
org.Rn.eg.db,
org.Sc.sgd.db,
org.Sco.eg.db,
org.Ss.eg.db,
org.Tgondii.eg.db,
org.Xl.eg.db,
PartheenMetaData.db,
pedbarrayv10.db,
pedbarrayv9.db,
POCRCannotation.db,
porcine.db,
puma,
r10kcod.db,
rae230a.db,
rae230b.db,
ragene10stprobeset.db,
ragene10sttranscriptcluster.db,
ragene11stprobeset.db,
ragene11sttranscriptcluster.db,
rat2302.db,
rgu34a.db,
rgu34b.db,
rgu34c.db,
rguatlas4k.db,
rgug4105a.db,
rgug4130a.db,
rgug4131a.db,
ri16cod.db,
RnAgilentDesign028282.db,
rnu34.db,
Roberts2005Annotation.db,
rtu34.db,
rwgcod.db,
SHDZ.db,
siggenes,
tigre,
u133x3p.db,
xlaevis.db,
yeast2.db,
ygs98.db,
zebrafish.db
Package Archives
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