To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GSEABase")

In most cases, you don't need to download the package archive at all.

GSEABase

This package is for version 2.11 of Bioconductor; for the stable, up-to-date release version, see GSEABase.

Gene set enrichment data structures and methods

Bioconductor version: 2.11

This package provides classes and methods to support Gene Set Enrichment Analysis (GSEA).

Author: Martin Morgan, Seth Falcon, Robert Gentleman

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("GSEABase")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GSEABase")

Documentation

To view documentation for the version of this package installed in your system, start R and enter: 

browseVignettes("GSEABase")
PDF R Script An introduction to GSEABase
PDF Reference Manual
Text NEWS

Details

biocViews Bioinformatics, Infrastructure, Software
Version 1.20.2
In Bioconductor since BioC 2.1 (R-2.6) (8.5 years)
License Artistic-2.0
Depends R (>= 2.6.0), BiocGenerics(>= 0.3.2), Biobase(>= 2.17.8), annotate, methods, graph
Imports BiocGenerics, annotate, AnnotationDbi, Biobase, graph, methods, XML
LinkingTo
Suggests hgu95av2.db, GO.db, org.Hs.eg.db, Rgraphviz
SystemRequirements
Enhances
URL
Depends On Me AGDEX, BicARE, gCMAP, GSVA, GSVAdata, PROMISE
Imports Me Category, categoryCompare, cellHTS2, GSRI, GSVA, HTSanalyzeR, PCpheno, phenoTest, PROMISE, ReportingTools
Suggests Me BiocCaseStudies, categoryCompare, gage, GlobalAncova, globaltest, GOstats, GSEAlm, PGSEA, phenoTest
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source GSEABase_1.20.2.tar.gz
Windows Binary GSEABase_1.20.2.zip
Mac OS X 10.6 (Snow Leopard)
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/GSEABase/tree/release-2.11
Package Short Url http://bioconductor.org/packages/GSEABase/
Package Downloads Report Download Stats

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