To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("gcrma")

In most cases, you don't need to download the package archive at all.

gcrma

This package is for version 2.10 of Bioconductor; for the stable, up-to-date release version, see gcrma.

Background Adjustment Using Sequence Information

Bioconductor version: 2.10

Background adjustment using sequence information

Author: Jean(ZHIJIN) Wu, Rafael Irizarry with contributions from James MacDonald <jmacdon at med.umich.edu> Jeff Gentry

Maintainer: Z. Wu <zwu at stat.brown.edu>

Citation (from within R, enter citation("gcrma")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("gcrma")

Documentation

To view documentation for the version of this package installed in your system, start R and enter: 

browseVignettes("gcrma")
PDF gcrma1.2
PDF Reference Manual
Text NEWS

Details

biocViews Microarray, OneChannel, Preprocessing, Software
Version 2.28.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 11 years)
License LGPL
Depends R (>= 2.6.0), affy(>= 1.23.2), graphics, methods, stats, utils, BiocInstaller
Imports Biobase, affy(>= 1.23.2), affyio(>= 1.13.3), IRanges, Biostrings(>= 2.11.32), splines
LinkingTo
Suggests affydata, tools, splines, hgu95av2cdf, hgu95av2probe
SystemRequirements
Enhances
URL
Depends On Me affyILM, affyPLM, bgx, maskBAD, simpleaffy, webbioc
Imports Me affycoretools, simpleaffy, virtualArray
Suggests Me AffyExpress, ArrayTools, BiocCaseStudies
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source gcrma_2.28.0.tar.gz
Windows Binary gcrma_2.28.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/gcrma/tree/release-2.10
Package Short Url http://bioconductor.org/packages/gcrma/
Package Downloads Report Download Stats

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