To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("virtualArray")

In most cases, you don't need to download the package archive at all.

virtualArray

This package is for version 2.10 of Bioconductor; for the stable, up-to-date release version, see virtualArray.

Build virtual array from different microarray platforms

Bioconductor version: 2.10

This package permits the user to combine raw data of different microarray platforms into one virtual array. It consists of several functions that act subsequently in a semi-automatic way. Doing as much of the data combination and letting the user concentrate on analysing the resulting virtual array.

Author: Andreas Heider

Maintainer: Andreas Heider <aheider at trm.uni-leipzig.de>

Citation (from within R, enter citation("virtualArray")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("virtualArray")

Documentation

To view documentation for the version of this package installed in your system, start R and enter: 

browseVignettes("virtualArray")
PDF virtualArray Vignette
PDF virtualArray-016.pdf
PDF virtualArray-022.pdf
PDF virtualArray-023.pdf
PDF Reference Manual

Details

biocViews Bioinformatics, DataImport, Microarray, MultipleComparisons, OneChannel, Preprocessing, Software
Version 1.0.0
In Bioconductor since BioC 2.10 (R-2.15) (4 years)
License GPL-3
Depends R (>= 2.3.0), methods, plyr, preprocessCore
Imports affy, affyPLM, AnnotationDbi, Biobase, gcrma, GEOquery, graphics, methods, reshape2, stats, utils
LinkingTo
Suggests affydata, plier, limma, lumi, org.Hs.eg.db
SystemRequirements
Enhances multicore
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source virtualArray_1.0.0.tar.gz
Windows Binary virtualArray_1.0.0.zip
Mac OS X 10.6 (Snow Leopard)
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/virtualArray/tree/release-2.10
Package Short Url http://bioconductor.org/packages/virtualArray/
Package Downloads Report Download Stats

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