To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("AffyExpress")

In most cases, you don't need to download the package archive at all.

AffyExpress

This package is for version 2.10 of Bioconductor; for the stable, up-to-date release version, see AffyExpress.

Affymetrix Quality Assessment and Analysis Tool

Bioconductor version: 2.10

The purpose of this package is to provide a comprehensive and easy-to-use tool for quality assessment and to identify differentially expressed genes in the Affymetrix gene expression data.

Author: Xiwei Wu <xwu at coh.org>, Xuejun Arthur Li <xueli at coh.org>

Maintainer: Xuejun Arthur Li <xueli at coh.org>

Citation (from within R, enter citation("AffyExpress")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("AffyExpress")

Documentation

To view documentation for the version of this package installed in your system, start R and enter: 

browseVignettes("AffyExpress")
PDF 1. Primer
PDF Reference Manual

Details

biocViews Annotation, Bioinformatics, DifferentialExpression, Microarray, OneChannel, Preprocessing, QualityControl, ReportWriting, Software, Visualization
Version 1.22.0
In Bioconductor since BioC 2.1 (R-2.6) (8.5 years)
License LGPL
Depends R (>= 2.10), affy(>= 1.23.4), limma
Imports
LinkingTo
Suggests simpleaffy, R2HTML, affyPLM, hgu95av2cdf, hgu95av2, test3cdf, genefilter, estrogen, annaffy, gcrma
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source AffyExpress_1.22.0.tar.gz
Windows Binary AffyExpress_1.22.0.zip
Mac OS X 10.6 (Snow Leopard)
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/AffyExpress/tree/release-2.10
Package Short Url http://bioconductor.org/packages/AffyExpress/
Package Downloads Report Download Stats

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