* using log directory 'E:/biocbld/bbs-2.10-data-experiment/meat/affydata.Rcheck' * using R version 2.15.1 (2012年06月22日) * using platform: i386-pc-mingw32 (32-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'affydata/DESCRIPTION' ... OK * this is package 'affydata' version '1.11.16' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking whether package 'affydata' can be installed ... OK * checking installed package size ... NOTE installed size is 23.4Mb sub-directories of 1Mb or more: celfiles 16.2Mb data 4.4Mb extracelfiles 2.7Mb * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... WARNING Execution halted A namespace must be able to be loaded with just the base namespace loaded: otherwise if the namespace gets loaded by a saved object, the session will be unable to start. Probably some imports need to be declared in the NAMESPACE file. ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... WARNING Execution halted A namespace must be able to be loaded with just the base namespace loaded: otherwise if the namespace gets loaded by a saved object, the session will be unable to start. Probably some imports need to be declared in the NAMESPACE file. ** checking whether the namespace can be unloaded cleanly ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... WARNING Note: significantly better compression could be obtained by using R CMD build --resave-data old_size new_size compress Dilution.rda 4.4Mb 2.5Mb xz * checking installed files from 'inst/doc' ... OK * checking examples ... NONE * checking for unstated dependencies in vignettes ... NOTE '::' or ':::' import not declared from: 'Biobase' * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignettes ... SKIPPED * checking PDF version of manual ... OK WARNING: There were 3 warnings. NOTE: There were 2 notes. See 'E:/biocbld/bbs-2.10-data-experiment/meat/affydata.Rcheck/00check.log' for details.
affydata.Rcheck/00install.out:
install for i386 * installing *source* package 'affydata' ... ** R ** data ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes 'affydata.Rnw' ** testing if installed package can be loaded Package [1,] "affydata" LibPath [1,] "E:/biocbld/bbs-2.10-data-experiment/meat/affydata.buildbin-libdir" Item Title [1,] "Dilution" "AffyBatch instance Dilution" install for x64 * installing *source* package 'affydata' ... ** testing if installed package can be loaded Package [1,] "affydata" LibPath [1,] "E:/biocbld/bbs-2.10-data-experiment/meat/affydata.buildbin-libdir" Item Title [1,] "Dilution" "AffyBatch instance Dilution" * MD5 sums packaged installation of 'affydata' as affydata_1.11.16.zip * DONE (affydata)