C. albicans HRQ2/C4_03820C Summary

Last curated 2014年06月25日
See the Literature Guide for most recent publications.

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Summary
Locus History Literature Gene Ontology Phenotype Homologs Protein
HRQ2 BASIC INFORMATION [ View References ]
Standard Name HRQ21
Systematic Name, Reference Strain C4_03820C_A (C. albicans SC5314)
Assembly 19/21 Identifier orf19.5037
Alias orf19.12504, IPF170542 , IPF22188.12 , IPF17054.22 , orf6.33143 , CA16932 , CaO19.125044 , CaO19.50374 , orf19.5037, C4_03820C_B, C4_03820C
Feature Type ORF, Uncharacterized
Description Protein of unknown function; mutants are viable; rat catheter and Spider biofilm induced (5, 6, 7)
Literature
Allele Name C4_03820C_B
Allelic Variation Non-synonymous variation between alleles
Sequence variation between alleles within 100 bp upstream of feature start coordinates
CUG Codons C4_03820C_A: 2
C4_03820C_B: 2
Systematic Names Used in Other Strains CAWG_03430 (C. albicans WO-1)
Orthologous genes in Candida species C. dubliniensis CD36 Ortholog(s) : Cd36_43560
C. auris B8441 Ortholog(s) : B9J08_000313
C. parapsilosis CDC317 Ortholog(s) : CPAR2_403920
View ortholog cluster : 17 genes among 17 Candida-related species/strains
Ortholog(s) in non-CGD species A. nidulans (AN2881) ; N. crassa (NCU11411)
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JBrowse for feature C4_03820C_A

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GO Annotations View all HRQ2 GO evidence and references

Molecular Function
Manually curated * molecular_function unknown (ND)

Biological Process
Manually curated * biological_process unknown (ND)

Cellular Component
Manually curated * cellular_component unknown (ND)
Mutant Phenotype View all HRQ2 Phenotype details and references
Large-scale survey
heterozygous null * viable

homozygous null * viable

null * viable

Sequence Information Ca22chr4A_C_albicans_SC5314:810853 to 809585 | JBrowse
Note: this feature is encoded on the Crick strand.
Last UpdateCoordinates: 2016年01月21日 | Sequence: 2014年06月24日

Subfeature Details
Relative
Coordinates		Chromosomal
Coordinates		Most Recent Update
CoordinatesSequence
CDS 1to1269810,853to809,5852016年01月21日2014年06月24日

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Sequence Information Ca22chr4A_C_albicans_SC5314:810853 to 809585 | JBrowse
Note: this feature is encoded on the Crick strand.
Allele Location
Allele C4_03820C_B 		Ca22chr4B_C_albicans_SC5314:810873 to 809605 | JBrowse
Note: this feature is encoded on the Crick strand.
Last UpdateCoordinates: 2016年01月21日 | Sequence: 2014年06月24日

Subfeature Details
Relative
Coordinates		Chromosomal
Coordinates		Most Recent Update
CoordinatesSequence
CDS 1to1269810,873to809,6052016年01月21日2014年06月24日

Allele Location
Allele C4_03820C_B Ca22chr4B_C_albicans_SC5314:810873 to 809605 | JBrowse
Note: this feature is encoded on the Crick strand.
External Links CGOB | Entrez Gene (1, 2) | Fungal Orthologs | FungiDB | GenBank (1, 2, 3, 4, 5, 6) | Non-periodic Expression | Pedant | PhylomeDB | TrEMBL | Transcription Modules
Primary CGDID CAL0000183083
ADDITIONAL INFORMATION for HRQ2
Gene/Sequence Resources
REFERENCES CITED ON THIS PAGE [View Complete Literature Guide for HRQ2]
1) Edskes HK, et al. (2011) Prion-forming ability of Ure2 of yeasts is not evolutionarily conserved. Genetics 188(1):81-90
CGD Papers Entry Pubmed Entry Reference LINKOUT Data
2) CandidaDB
CGD Papers Entry
3) CGD (2005) CGD comparison of orf6 and orf19 predicted protein products.
CGD Papers Entry
4) Maglott D, et al. (2007) Entrez Gene: gene-centered information at NCBI. Nucleic Acids Res 35(Database issue):D26-31
CGD Papers Entry Pubmed Entry Reference LINKOUT Reference LINKOUT Reference LINKOUT Reference LINKOUT Reference LINKOUT
5) Nobile CJ, et al. (2003) Genetic control of chlamydospore formation in Candida albicans. Microbiology 149(Pt 12):3629-37
CGD Papers Entry Pubmed Entry Reference LINKOUT
6) Nett JE, et al. (2009) Time course global gene expression analysis of an in vivo Candida biofilm. J Infect Dis 200(2):307-13
CGD Papers Entry Pubmed Entry Reference LINKOUT Web Supplement
7) Nobile CJ, et al. (2012) A recently evolved transcriptional network controls biofilm development in Candida albicans. Cell 148(1-2):126-38
CGD Papers Entry Pubmed Entry Reference LINKOUT Data

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