Genotyping

 

Resources:

Retroviruses

Reference sets:

Retroviruses
Hepatitis B
Hepatitis C
Poliovirus

Download list of reference sets

Help

Tools:

Genotyping

External links:

Division of AIDS at NIAID

LANL HIV Sequence Database

Stanford HIV RT and Protease Gene Database

Important Update

We are planning to phase out this tool.
If it is a part of your workflow, tell us how you use it at info@ncbi.nlm.nih.gov. We value your input.
For up-to-date virus sequence data and analysis tools, please visit NCBI Virus.
    This tool helps identify the genotype of a viral sequence. A window is slid along the query sequence and each window is compared by BLAST to each of the reference sequences for a particular virus. This approach is especially useful for the analysis of recombinant sequences.   (Try an ).

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Please send questions and comments to info@ncbi.nlm.nih.gov

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