Alignment

PubMed Nucleotide Protein Genome Taxonomy Structure PopSet

Resources:

Retroviruses

Reference sets:

Retroviruses
Hepatitis B
Hepatitis C
Poliovirus

Download list of reference sets

Help

Tools:

Genotyping

External links:

Division of AIDS at NIAID

LANL HIV Sequence Database

Stanford HIV RT and Protease Gene Database

Compare your query sequence(s) to the reference genome sequence or master sequence from one of the reference sets of subtypes shown below. Multiple query sequences will be anchored (shown in relation) to the master sequence. (Try an ).

Select:

Select reference genome or sequence from a set:

Enter your sequence(s) as Accession/GI or FASTA

Please send questions and comments to info@ncbi.nlm.nih.gov