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1. single-cell-best-practices single-cell-best-practices Public

   https://www.sc-best-practices.org

   Jupyter Notebook 1k 237

2. scvelo scvelo Public

   RNA Velocity generalized through dynamical modeling

   Python 469 110

3. cellrank cellrank Public

   CellRank: dynamics from multi-view single-cell data

   Python 399 50

4. scarches scarches Public

   Reference mapping for single-cell genomics

   Jupyter Notebook 383 64

5. scib scib Public

   Benchmarking analysis of data integration tools

   Python 388 71

6. ehrapy ehrapy Public

   Electronic Health Record Analysis with Python.

   Python 308 36