All Superinterfaces:

BioEntryDBLite

All Known Subinterfaces:

RichSequenceDB

All Known Implementing Classes:

AbstractBioEntryDB, AbstractRichSequenceDB, BioSQLBioEntryDB, BioSQLRichSequenceDB, GenbankRichSequenceDB, GenpeptRichSequenceDB, HashBioEntryDB, HashRichSequenceDB

public interface BioEntryDB
extends BioEntryDBLite 

Since:

1.5

Author:

Matthew Pocock, Gerald Loeffler, Thomas Down, Richard Holland

• Field Summary

  • Fields inherited from interface org.biojavax.bio.db.BioEntryDBLite

    BIOENTRYS

• Method Summary

  All Methods

  Modifier and Type	Method and Description
  BioEntryIterator	getBioEntryIterator () Returns a BioEntryIterator over all BioEntrys in the database.
  Set	ids () Get an immutable set of all of the IDs in the database.

  • Methods inherited from interface org.biojavax.bio.db.BioEntryDBLite

    addBioEntry, getBioEntry, getBioEntrys, getBioEntrys, getName, removeBioEntry

• Method Detail

  • ids

    Set ids()

    Get an immutable set of all of the IDs in the database. The ids are legal arguments to getBioEntry.

    Returns:

    a Set of ids - at the moment, strings

  • getBioEntryIterator

    BioEntryIterator getBioEntryIterator()

    Returns a BioEntryIterator over all BioEntrys in the database. The order of retrieval is undefined.

    Returns:

    a BioEntryIterator over all BioEntrys