All Superinterfaces:

Serializable

All Known Implementing Classes:

RemoteQBlastAlignmentProperties

public interface RemotePairwiseAlignmentProperties
extends Serializable 

Since:

1.8

Author:

Sylvain Foisy, Diploide BioIT

• Field Summary

  Fields

  Modifier and Type	Field and Description
  static long	serialVersionUID

• Method Summary

  All Methods

  Modifier and Type	Method and Description
  String	getAlignmentOption (String key) Method that returns the value associated with the key given in parameter.
  Set<String>	getAlignmentOptions () Method to get all keys to the information stored in this object.
  void	setAlignementOption (String key, String val) Method to set the value for a specific alignment parameter using a key to store in a map.

• Field Detail

  • serialVersionUID

    static final long serialVersionUID 

    See Also:

    Constant Field Values

• Method Detail

  • getAlignmentOption

    String getAlignmentOption(String key)
     throws BioException 

    Method that returns the value associated with the key given in parameter.

    Parameters:

    key - :a String with the required key for this map.

    Returns:

    a String with the value associated with this key

    Throws:

    BioException - if key is not in the map of output options.

  • setAlignementOption

    void setAlignementOption(String key,
     String val)

    Method to set the value for a specific alignment parameter using a key to store in a map.

    Parameters:

    key - :the key use to designate the value to be stored

    val - :the actual value matched to key

  • getAlignmentOptions

    Set<String> getAlignmentOptions()

    Method to get all keys to the information stored in this object.

    Returns:

    a Set with all keys held in this instance of the object