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org.biojava.bio.dp

Interface HMMTrainer

  • All Known Implementing Classes:
    SimpleHMMTrainer


    public interface HMMTrainer 
    interface implemented by objects that train HMMs.
    Author:
    David Huen
    • Method Summary

      All Methods
      Modifier and Type Method and Description
      void completeCycle ()
      indicate that a cycle of training is completed and the emission/transition matrices should be updated.
      void recordEmittedSymbol (State state, Symbol symbol, double weight)
      record that the specified symbol was emitted from the specified state.
      void recordTransition (State source, State dest, double weight)
      record that a transition was observed between the specified states.
      void startCycle ()
      called to put the trainer into an initial state for a new round of training.
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