Access to interaction data via PSICQUIC web services

psicquic.curated.innatedb.com: Curated InnateDB interaction data.

psicquic.all.innatedb.com: All experimentally validated interactions in InnateDB (including manually curated ones).

A web service is meant to be used in machine-to-machine communications. However, you can get PSI-MITAB data directly in your browser by using the REST Access, like in http://psicquic.curated.innatedb.com/webservices/current/search/query/IRAK*. There are multiple formats you can chose from and use like this: http://psicquic.curated.innatedb.com/webservices/current/search/query/IRAK*?format=xml25

IMEx compliant curated interactions via EBI:
Additionally, InnateDB's curation team has been curating molecular interactions from Nature Immunology since Sept 2010 to IMEx standards. These are submitted via the IntAct curation system as InnateDB does not have the capability yet of recording all IMEx fields; also, these interactions are not necessarily relevant to innate immunity. They are accessible via the IMEx website.

These data, updated once a week, are also available for download in MITAB 2.7 file format.

If you use InnateDB for your research, please cite the following publication:

Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucl. Acids Res. (2013) 41 (D1)

InnateDB is being developed jointly by the Brinkman Laboratory (Simon Fraser University, British Columbia, Canada), the Hancock Laboratory (University of British Columbia, Vancouver, British Columbia) and the Lynn EMBL Australia Group (South Australian Health & Medical Research Institute and Flinders University, Adelaide, Australia).

Funding is currently provided by Allergen and EMBL Australia. Previous funding has been provided by Genome Canada, the Foundation for the National Institutes of Health through the Grand Challenges in Global Health initiative and by Teagasc. InnateDB curated interactions are licensed under the Design Science License. All other data is licensed under the terms of the originating database. Contact: innatedb-mail@sfu.ca