Pig
Sus scrofa
Annotation progress
Click on a chromosome to browse:
- chromosome 1
- chromosome 2
- chromosome 3
- chromosome 4
- chromosome 5
- chromosome 6
- chromosome 7
- chromosome 7-LW
- chromosome 8
- chromosome 9
- chromosome 10
- chromosome 11
- chromosome 12
- chromosome 13
- chromosome 14
- chromosome 15
- chromosome 16
- chromosome 17
- chromosome 18
- chromosome X
- chromosome X-WTSI
- chromosome Y-WTSI
- chromosome U_Y Karyotype selector
Shading indicates unannotated regions
This Release
Release Date
25 August 2015
Datafreeze Date
8 June 2015
As used in
Ensembl 69 genebuild
Assembly
Sscrofa10.2
Source
Swine Genome Sequencing Consortium (SGSC)
Annotation Method
Havana and Community Manual Annotation
Genome
Vega contains annotation on three other assemblies:- chromosome 7-LW is a small part of chromsome 7 containing the MHC region of the Large White breed.
- chromosomes X-WTSI and Y-WTSI are alternative assemblies of the DUROC allosomes. Chromosome U_Y represents clones known to be part of the Y-WTSI assembly but which are currently unplaced.
Comparative Analysis
More info...
| Region | Available species / haplotypes / strains | Examples |
|---|---|---|
| MHC | dog, chimpanzee, gorilla, human (ref. plus 7 haplotypes), mouse (ref. plus 2 NOD strains), pig (Duroc & Large White), tasmanian devil, wallaby | example |
| LRC | pig, gorilla and human (ref. and 8 haplotypes). | example |
Community annotation
Vega pig contains manual annotation both from Havana and from the Immune Response Annotation Group (IRAG) community annotation initiative.
.