Jun ADACHI

Profile Information

Affiliation

Associate Professor, Department of Data Science, The Institute of Statistical Mathematics

(Concurrent)

Associate professor, SOKENDAI (The Graduate University for Advanced Studies)

Degree

PhD(Sokendai)

J-GLOBAL ID

200901039332736657

researchmap Member ID

5000063869

Research Interests

• Bioinformatics
• Molecular phylogeny
• Molecular evolution

Research Areas

• Life sciences / Biodiversity and systematics /
• Life sciences / Evolutionary biology /
• Life sciences / Systems genomics /
• Informatics / Statistical science /

Research History

• 2003 - Present

  Associate Professor, SOKENDAI (The Graduate University for Advanced Studies)
• 2003 - Present

  Associate Professor, The Institute of Statistical Mathematics
• 2002 - 2003

  Senior Research Scientist, Genomic Sciences Center, REKEN
• 2000 - 2002

  Research Scientist, Genomic Sciences Center, REKEN
• 1999 - 2000

  COE Postdoctoral Fellowship, The Institute of Statistical Mathematics
• 1997 - 1999

  Postdoctoral Fellowship, Department of Zoology, University of Oxford
• 1995 - 1997

  Postdoctoral Fellowship, JSPS

Awards

• 1996

  Inoue Research Award for Young Scientists, Inoue Foundation for Science

  Jun ADACHI

Papers

• RODENT POLYPHYLY

  M HASEGAWA, Y CAO, J ADACHI, TA YANO

  NATURE, 355(6361) 595-595, Feb, 1992 Peer-reviewed
• AMINO-ACID SUBSTITUTION OF PROTEINS CODED FOR IN MITOCHONDRIAL-DNA DURING MAMMALIAN EVOLUTION

  J ADACHI, M HASEGAWA

  JAPANESE JOURNAL OF GENETICS, 67(3) 187-197, Jun, 1992 Peer-reviewed
• PHYLOGENETIC PLACE OF GIARDIA LAMBLIA A PROTOZOAN THAT LACKS MITOCHONDRIA

  T HASHIMOTO, J ADACHI, M HASEGAWA

  ENDOCYTOBIOSIS AND CELL RESEARCH, 9(1) 59-69, Dec, 1992 Peer-reviewed
• TEMPO AND MODE OF MITOCHONDRIAL-DNA EVOLUTION IN VERTEBRATES AT THE AMINO-ACID-SEQUENCE LEVEL - RAPID EVOLUTION IN WARM-BLOODED VERTEBRATES

  J ADACHI, Y CAO, M HASEGAWA

  JOURNAL OF MOLECULAR EVOLUTION, 36(3) 270-281, Mar, 1993 Peer-reviewed
• THE GIANT PANDA IS CLOSER TO A BEAR, JUDGED BY ALPHA-HEMOGLOBIN AND BETA-HEMOGLOBIN SEQUENCES

  T HASHIMOTO, E OTAKA, J ADACHI, K MIZUTA, M HASEGAWA

  JOURNAL OF MOLECULAR EVOLUTION, 36(3) 282-289, Mar, 1993 Peer-reviewed
• EARLY BRANCHINGS IN THE EVOLUTION OF EUKARYOTES - ANCIENT DIVERGENCE OF ENTAMOEBA THAT LACKS MITOCHONDRIA REVEALED BY PROTEIN-SEQUENCE DATA

  M HASEGAWA, T HASHIMOTO, J ADACHI, N IWABE, T MIYATA

  JOURNAL OF MOLECULAR EVOLUTION, 36(4) 380-388, Apr, 1993 Peer-reviewed
• PROTEIN PHYLOGENY GIVES A ROBUST ESTIMATION FOR EARLY DIVERGENCES OF EUKARYOTES - PHYLOGENETIC PLACE OF A MITOCHONDRIA-LACKING PROTOZOAN, GIARDIA-LAMBLIA

  T HASHIMOTO, Y NAKAMURA, F NAKAMURA, T SHIRAKURA, J ADACHI, N GOTO, K OKAMOTO, M HASEGAWA

  MOLECULAR BIOLOGY AND EVOLUTION, 11(1) 65-71, Jan, 1994 Peer-reviewed
• PHYLOGENETIC PLACE OF A MITOCHONDRIA-LACKING PROTOZOAN, ENTAMOEBA-HISTOLYTICA, INFERRED FROM AMINO-ACID-SEQUENCES OF ELONGATION FACTOR-II

  T SHIRAKURA, T HASHIMOTO, Y NAKAMURA, T KAMAISHI, Y CAO, J ADACHI, M HASEGAWA, A YAMAMOTO, N GOTO

  JAPANESE JOURNAL OF GENETICS, 69(2) 119-135, Apr, 1994 Peer-reviewed
• PHYLOGENETIC PLACE OF GUINEA-PIGS - NO SUPPORT OF THE RODENT-POLYPHYLY HYPOTHESIS FROM MAXIMUM-LIKELIHOOD ANALYSES OF MULTIPLE PROTEIN SEQUENCES

  Y CAO, J ADACHI, TA YANO, M HASEGAWA

  MOLECULAR BIOLOGY AND EVOLUTION, 11(4) 593-604, Jul, 1994 Peer-reviewed
• EUTHERIAN PHYLOGENY AS INFERRED FROM MITOCHONDRIAL-DNA SEQUENCE DATA

  Y CAO, J ADACHI, M HASEGAWA

  JAPANESE JOURNAL OF GENETICS, 69(5) 455-472, Oct, 1994 Peer-reviewed
• PHYLOGENETIC-RELATIONSHIPS AMONG EUTHERIAN ORDERS ESTIMATED FROM INFERRED SEQUENCES OF MITOCHONDRIAL PROTEINS - INSTABILITY OF A TREE-BASED ON A SINGLE-GENE

  Y CAO, J ADACHI, A JANKE, S PAABO, M HASEGAWA

  JOURNAL OF MOLECULAR EVOLUTION, 39(5) 519-527, Nov, 1994 Peer-reviewed
• PHYLOGENY OF WHALES - DEPENDENCE OF THE INFERENCE ON SPECIES SAMPLING

  J ADACHI, M HASEGAWA

  MOLECULAR BIOLOGY AND EVOLUTION, 12(1) 177-179, Jan, 1995 Peer-reviewed
• PHYLOGENETIC PLACE OF KINETOPLASTID PROTOZOA INFERRED FROM A PROTEIN PHYLOGENY OF ELONGATION-FACTOR 1-ALPHA

  T HASHIMOTO, Y NAKAMURA, T KAMAISHI, J ADACHI, F NAKAMURA, K OKAMOTO, M HASEGAWA

  MOLECULAR AND BIOCHEMICAL PARASITOLOGY, 70(1-2) 181-185, Mar, 1995 Peer-reviewed
• IMPROVED DATING OF THE HUMAN CHIMPANZEE SEPARATION IN THE MITOCHONDRIAL-DNA TREE - HETEROGENEITY AMONG AMINO-ACID SITES

  J ADACHI, M HASEGAWA

  JOURNAL OF MOLECULAR EVOLUTION, 40(6) 622-628, Jun, 1995 Peer-reviewed
• PHYLOGENETIC PLACE OF MITOCHONDRION-LACKING PROTOZOAN, GIARDIA-LAMBLIA INFERRED FROM AMINO-ACID-SEQUENCES OF ELONGATION-FACTOR-2

  T HASHIMOTO, Y NAKAMURA, T KAMAISHI, F NAKAMURA, J ADACHI, K OKAMOTO, M HASEGAWA

  MOLECULAR BIOLOGY AND EVOLUTION, 12(5) 782-793, Sep, 1995 Peer-reviewed
• Tempo and mode of synonymous substitutions in mitochondrial DNA of primates

  J Adachi, M Hasegawa

  MOLECULAR BIOLOGY AND EVOLUTION, 13(1) 200-208, Jan, 1996 Peer-reviewed
• Phylogenetic position of kinetoplastid protozoa inferred from the protein phylogenies of elongation factors 1 alpha and 2

  Y Nakamura, T Hashimoto, T Kamaishi, J Adachi, F Nakamura, K Okamoto, M Hasegawa

  JOURNAL OF BIOCHEMISTRY, 119(1) 70-79, Jan, 1996 Peer-reviewed
• Effects of character weighting and species sampling on phylogeny reconstruction: A case study based on DNA sequence data in cetaceans

  Milinkovitch, M. C, Leduc, R. G, Adachi, J, Farnir, F, Georges, M, Hasegawa, M

  Genetics, 144(4) 1817-1833, 1996 Peer-reviewed
• Model of amino acid substitution in proteins encoded by mitochondrial DNA

  J Adachi, M Hasegawa

  JOURNAL OF MOLECULAR EVOLUTION, 42(4) 459-468, Apr, 1996 Peer-reviewed
• Phylogenetic position of Cetaceans relative to Artiodactyls: Reanalysis of mitochondrial and nuclear sequences

  M Hasegawa, J Adachi

  MOLECULAR BIOLOGY AND EVOLUTION, 13(5) 710-717, May, 1996 Peer-reviewed

Misc.

• Comment on the Quartet Puzzling Method for Finding Maximum-Likelihood Tree Topologies

  Y. Cao, J. Adachi, M. Hasegawa

  Molecular Biology and Evolution, 15(1) 87-89, Jan 1, 1998

Professional Memberships

• Society of Evolutionary Studies, Japan
• The Genetics Society of Japan
• The Molecular Biology Society of Japan

Research Projects

• Deployment of ancient DNA research toward diversity elucidation of the lost bio ecological system

  Interdisciplinary Research Public Funding, SOKENDAI, Apr, 2014 - Mar, 2017

  Jun ADACHI
• Method of estimating the branching age

  Grant-in-Aid for Scientific Research (C), JSPS, Apr, 2013 - Mar, 2016

  Masami HASEGAWA
• Method and practice of the genome phylogenetic

  Grant-in-Aid for Scientific Research (C), JSPS, Apr, 2010 - Mar, 2013

  Masami HASEGAWA
• Method of estimating the molecular phylogeny in the post-genome era

  Grant-in-Aid for Scientific Research (B), JSPS, Apr, 2007 - Mar, 2010

  Jun ADACHI
• Modeling of molecular evolution and estimating molecular phylogeney

  Grant-in-Aid for Scientific Research (B), JSPS, Apr, 2004 - Mar, 2007

  Masami HASEGAWA
• Fundamental studies of the evolution mechanism by genomic structure comparison and gene phylogenetic analysis

  Grant-in-Aid for Young Scientists (B), JSPS, Apr, 2004 - Mar, 2007

  Jun ADACHI