dStruct

This is the released version of dStruct; for the devel version, see dStruct.

Identifying differentially reactive regions from RNA structurome profiling data

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DOI: 10.18129/B9.bioc.dStruct

Bioconductor version: Release (3.22)

dStruct identifies differentially reactive regions from RNA structurome profiling data. dStruct is compatible with a broad range of structurome profiling technologies, e.g., SHAPE-MaP, DMS-MaPseq, Structure-Seq, SHAPE-Seq, etc. See Choudhary et al., Genome Biology, 2019 for the underlying method.

Author: Krishna Choudhary [aut, cre] ORCID iD ORCID: 0000-0002-7966-1527 , Sharon Aviran [aut] ORCID iD ORCID: 0000-0003-1872-9820

Maintainer: Krishna Choudhary <kchoudhary at ucdavis.edu>

Citation (from within R, enter citation("dStruct")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("dStruct")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("dStruct")

Differential RNA structurome analysis using `dStruct` HTML R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Sequencing, Software, StatisticalMethod, StructuralPrediction

Version 1.16.0

In Bioconductor since BioC 3.14 (R-4.1) (4 years)

License GPL (>= 2)

Depends R (>= 4.1)

Imports zoo, ggplot2, purrr, reshape2, parallel, IRanges, S4Vectors, rlang, grDevices, stats, utils

System Requirements

URL https://github.com/dataMaster-Kris/dStruct

Bug Reports https://github.com/dataMaster-Kris/dStruct/issues

Suggests BiocStyle, knitr, rmarkdown, tidyverse, testthat (>= 3.0.0)

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package dStruct_1.16.0.tar.gz

Windows Binary (x86_64) dStruct_1.15.0.zip

macOS Binary (x86_64) dStruct_1.16.0.tgz

macOS Binary (arm64) dStruct_1.16.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/dStruct

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/dStruct

Bioc Package Browser https://code.bioconductor.org/browse/dStruct/

Package Short Url https://bioconductor.org/packages/dStruct/

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