CBN2Path

This is the released version of CBN2Path; for the devel version, see CBN2Path.

"CBN2Path: an R/Bioconductor package for the analysis of cancer progression pathways using Conjunctive Bayesian Networks

Platform availability badge Ranking badge Support activity badge Years in BioConductor badge Build results badge Last commit badge Dependency count badge

DOI: 10.18129/B9.bioc.CBN2Path

Bioconductor version: Release (3.22)

CBN2Path package provides a unifying interface to facilitate CBN-based quantification, analysis and visualization of cancer progression pathways.

Author: William Choi-Kim [aut, cre] ORCID iD ORCID: 0009-0000-3902-4745 , Sayed-Rzgar Hosseini [aut] ORCID iD ORCID: 0000-0002-2308-6754

Maintainer: William Choi-Kim <william at williamck.com>

Citation (from within R, enter citation("CBN2Path")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("CBN2Path")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CBN2Path")

CBN2Path Vignette HTML R Script

Reference Manual PDF

INSTALL Text

LICENSE Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Bayesian, GraphAndNetwork, Pathways, Software, StatisticalMethod

Version 1.0.0

In Bioconductor since BioC 3.22 (R-4.5) (< 6 months)

License MIT + file LICENSE

Depends R (>= 4.1.0)

Imports R6, ggraph, tidygraph, ggplot2, patchwork, cowplot, magrittr, igraph, rlang, grDevices, coda, graphics, stats, TCGAbiolinks, BiocParallel

System Requirements GNU Scientific Library (GSL)

URL https://github.com/rockwillck/CBN2Path http://dx.doi.org/10.1093/biomet/asp023 http://dx.doi.org/10.1093/bioinformatics/btp505

Bug Reports https://github.com/rockwillck/CBN2Path/issues

Suggests testthat (>= 3.0.0), BiocStyle, knitr, rmarkdown

Linking To

Enhances

Depends On Me

Imports Me

Suggests Me

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package CBN2Path_1.0.0.tar.gz

Windows Binary (x86_64)

macOS Binary (x86_64) CBN2Path_1.0.0.tgz

macOS Binary (arm64) CBN2Path_1.0.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/CBN2Path

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/CBN2Path

Bioc Package Browser https://code.bioconductor.org/browse/CBN2Path/

Package Short Url https://bioconductor.org/packages/CBN2Path/

Package Downloads Report Download Stats

Old Source Packages for BioC 3.22 Source Archive