CBN2Path

This is the development version of CBN2Path; for the stable release version, see CBN2Path.

CBN2Path: an R/Bioconductor package for the analysis of cancer progression pathways using Conjunctive Bayesian Networks

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DOI: 10.18129/B9.bioc.CBN2Path

Bioconductor version: Development (3.23)

CBN2Path package provides a unifying interface to facilitate CBN-based quantification, analysis and visualization of cancer progression pathways.

Author: William Choi-Kim [aut, cre], Sayed-Rzgar Hosseini [aut, cre]

Maintainer: William Choi-Kim <william at williamck.com>, Sayed-Rzgar Hosseini <razgar at gmail.com>

Citation (from within R, enter citation("CBN2Path")):

Installation

To install this package, start R (version "4.6") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("CBN2Path")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CBN2Path")

CBN2Path Vignette HTML R Script

Reference Manual PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Bayesian, GraphAndNetwork, Pathways, Software, StatisticalMethod

Version 1.1.4

In Bioconductor since BioC 3.22 (R-4.5) (< 6 months)

License MIT + file LICENSE

Depends R (>= 4.1.0)

Imports R6, ggraph, tidygraph, ggplot2, patchwork, cowplot, magrittr, igraph, rlang, grDevices, coda, graphics, stats, TCGAbiolinks, BiocParallel

System Requirements GNU Scientific Library (GSL)

URL https://github.com/rockwillck/CBN2Path http://dx.doi.org/10.1093/biomet/asp023 http://dx.doi.org/10.1093/bioinformatics/btp505

Bug Reports https://github.com/rockwillck/CBN2Path/issues

Suggests testthat (>= 3.0.0), BiocStyle, knitr, rmarkdown

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package CBN2Path_1.1.4.tar.gz

Windows Binary (x86_64)

macOS Binary (x86_64)

macOS Binary (arm64) CBN2Path_1.1.4.tgz

Source Repository git clone https://git.bioconductor.org/packages/CBN2Path

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/CBN2Path

Bioc Package Browser https://code.bioconductor.org/browse/CBN2Path/

Package Short Url https://bioconductor.org/packages/CBN2Path/

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