sketchR

This is the development version of sketchR; for the stable release version, see sketchR.

An R interface for python subsampling/sketching algorithms

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DOI: 10.18129/B9.bioc.sketchR

Bioconductor version: Development (3.23)

Provides an R interface for various subsampling algorithms implemented in python packages. Currently, interfaces to the geosketch and scSampler python packages are implemented. In addition it also provides diagnostic plots to evaluate the subsampling.

Author: Charlotte Soneson [aut, cre] ORCID iD ORCID: 0000-0003-3833-2169 , Michael Stadler [aut] ORCID iD ORCID: 0000-0002-2269-4934 , Friedrich Miescher Institute for Biomedical Research [cph]

Maintainer: Charlotte Soneson <charlottesoneson at gmail.com>

Citation (from within R, enter citation("sketchR")):

Installation

To install this package, start R (version "4.6") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("sketchR")

For older versions of R, please refer to the appropriate Bioconductor release.