basilisk

This is the development version of basilisk; for the stable release version, see basilisk.

Freezing Python Dependencies Inside Bioconductor Packages

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DOI: 10.18129/B9.bioc.basilisk

Bioconductor version: Development (3.23)

Installs a self-contained conda instance that is managed by the R/Bioconductor installation machinery. This aims to provide a consistent Python environment that can be used reliably by Bioconductor packages. Functions are also provided to enable smooth interoperability of multiple Python environments in a single R session.

Author: Aaron Lun [aut, cre, cph], Vince Carey [ctb]

Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>

Citation (from within R, enter citation("basilisk")):

Installation

To install this package, start R (version "4.6") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("basilisk")

For older versions of R, please refer to the appropriate Bioconductor release.