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signatureSearch
This is the development version of signatureSearch; for the stable release version, see signatureSearch.
Environment for Gene Expression Searching Combined with Functional Enrichment Analysis
Bioconductor version: Development (3.23)
This package implements algorithms and data structures for performing gene expression signature (GES) searches, and subsequently interpreting the results functionally with specialized enrichment methods.
Author: Yuzhu Duan [aut], Brendan Gongol [cre, aut], Thomas Girke [aut]
Maintainer: Brendan Gongol <bgong001 at ucr.edu>
citation("signatureSearch")):
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("signatureSearch")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("signatureSearch")
Details
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Follow Installation instructions to use this package in your R session.