rawDiag

This is the development version of rawDiag; for the stable release version, see rawDiag.

Brings Orbitrap Mass Spectrometry Data to Life; Fast and Colorful

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DOI: 10.18129/B9.bioc.rawDiag

Bioconductor version: Development (3.23)

Optimizing methods for liquid chromatography coupled to mass spectrometry (LC-MS) poses a nontrivial challenge. The rawDiag package facilitates rational method optimization by generating MS operator-tailored diagnostic plots of scan-level metadata. The package is designed for use on the R shell or as a Shiny application on the Orbitrap instrument PC.

Author: Christian Panse [aut, cre] ORCID iD ORCID: 0000-0003-1975-3064 , Christian Trachsel [aut], Tobias Kockmann [aut]

Maintainer: Christian Panse <cp at fgcz.ethz.ch>

Citation (from within R, enter citation("rawDiag")):

Installation

To install this package, start R (version "4.6") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("rawDiag")

For older versions of R, please refer to the appropriate Bioconductor release.