A fast image processing library with low memory needs.

• Updated Oct 25, 2025
• C

Python package for dealing with whole slide images (.svs) for machine learning, particularly for fast prototyping. Includes patch sampling and storing using OpenSlide. Patches may be stored in LMDB, HDF5 files, or to disk. It is highly recommended to fork and download this repository so that personal customisations can be made for your work.

• Updated Jul 25, 2024
• Jupyter Notebook

Go binding generator for libvips image processing library

• Updated Oct 25, 2025
• Go

Conversion tool/library for converting whole slide images to DICOM

• Updated Jan 20, 2025
• C++

Tool to visualize gigantic pathology images and use AI to segment cancer cells and present as an overlay

• Updated Jan 13, 2025
• JavaScript

Full package for applying deep learning to virtual slides.

• Updated Sep 7, 2018
• Python

Tools for whole slide image (WSI) processing. Especially for (pairwise) patch extraction, annotation parsing and data preparation for deep learning purposes.

• Updated Dec 10, 2024
• Python

🔬 Syntax - the arrangement of whole-slide-images and their image tiles to create well-formed computational pathology pipelines.

• Updated Nov 22, 2022
• Python

Simple library for preprocessing histopathological whole-slide images (WSI) into tiles (a.k.a. patches) towards deep learning

• Updated Sep 25, 2023
• Python

Simple tool for converting WSIs from cellSens VSI to pyramidal TIFF

• Updated Aug 21, 2025
• Jupyter Notebook

A pyqt5 widget for viewing whole-slide images with Openslide

• Updated Feb 3, 2018
• Python

Preprocessing module for large histological images

• Updated Jun 16, 2023
• Python

a toolbox for manipulation of digital pathology slides and annotations

• Updated Aug 11, 2020
• Jupyter Notebook

European Computer Vision Library (ECVL). A general-purpose computer vision library developed to support healthcare use cases within the DeepHealth project, with the aim of facilitating the integration of existing state-of-the-art libraries.

• Updated Apr 29, 2022
• C++

manylinux wheel files for girder/large_image dependencies

• Updated Oct 9, 2025
• Dockerfile

LabelSlide is a slide annotation tool and label object bounding boxes in virtual slides (generally used in pathology)

• Updated Jun 28, 2021
• JavaScript

A cross platform version of Bio library & program. Bio is a library & program for annotating, & editing various microscopy imaging formats using Bioformats supported images. including whole slide, pyramidal & series.

• Updated Jun 23, 2025
• C#

An ITK ImageIO module for the OpenSlide library.

• Updated Mar 26, 2025
• C++

🔬 Python SDK providing access to the Aignostics Platform. Includes Aignostics Launchpad (Desktop Application), Aignostics CLI (Command-Line Interface), example notebooks, and Aignostics Client Library.

• Updated Oct 25, 2025
• Python

An application that can quickly view large images like .tif, .svs, .bif, .hdpi, .vms and .mrxs file(s).

• Updated Sep 21, 2021
• JavaScript