Web-based molecule sketcher
A Python module to calculate alignment between two sequences using EMBOSS' needle, stretcher, and water
Automatically identify non-interfering nucleotide linkers between a pegRNA and 3' motif
🍣 🦐 A lightweight nucleotide bacterial ortholog clustering tool
This is one of my first python scripts for a simple web-based tool that will generate basic information from the query DNA sequence.
Random DNA 🧬 nucleotide generator and reverse compliment finder 🔬
The active development version of the degenerate bases algorithm.
Swift package for bioinformatics
Protein to RNA reverse translation
Basically BLAST, but written in PostgreSQL😉
Narrowly, Find sequences including nucleotide(or amino acid) spacers (Broadly, you can find the speific sequences of front and back while ignoring the middle sequences), and Write the result of finding them to csv files.(Language: Python3.9)
API repo: https://github.com/shamseen/pngcat-api
Needleman–Wunsch algorithm implementation in Go.
DNA or RNA complementary, reverse and reverse complementary sequences generator
Analysis of FASTA ,Protein,DNA sequence.
Recode a DNA sequence to match a target amino‐acid sequence with the minimal number of nucleotide changes, preserving the reading frame. Includes a CLI and Python API.
Filter fasta sequences by length
BIAP - A website that serves as a tool to analyze biological data (nucleotide and aminoacid sequences) and provide biology-related information in one place.
This program determines the optimal alignment of two nucleotide sequences using the Smith–Waterman algorithm. Optimality, of course, is determined by the values of the gap penalty g and the weight matrix (that lists all of the s(ai , bj )). Finally the program outputs the optimal similarity score along with the optimal alignment.
A Python Suite for Evolutionary and Comparative Genomics
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