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[ENH] Add interface to antsAffineInitializer #1980

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Merged
satra merged 2 commits into nipy:master from oesteban:enh/AntsAffineInitializer
Apr 29, 2017

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@oesteban oesteban commented Apr 28, 2017

Adds a very simple interface to antsAffineInitializer, which is used
in the antsBrainExtraction.sh script to initialize the registration to
template.

Adds a very simple interface to `antsAffineInitializer`, which is used
in the `antsBrainExtraction.sh` script to initialize the registration to
template.
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Codecov Report

Merging #1980 into master will increase coverage by 0.01%.
The diff coverage is 90.9%.

Impacted file tree graph

@@ Coverage Diff @@
## master #1980 +/- ##
==========================================
+ Coverage 72.6% 72.61% +0.01% 
==========================================
 Files 1070 1071 +1 
 Lines 54456 54487 +31 
 Branches 7868 7872 +4 
==========================================
+ Hits 39537 39565 +28 
- Misses 13686 13688 +2 
- Partials 1233 1234 +1
Flag Coverage Δ
#smoketests 72.61% <90.9%> (+0.01%) ⬆️
#unittests 70.16% <90.9%> (+0.01%) ⬆️
Impacted Files Coverage Δ
nipype/interfaces/ants/__init__.py 100% <100%> (ø) ⬆️
...terfaces/ants/tests/test_auto_AffineInitializer.py 85.71% <85.71%> (ø)
nipype/interfaces/ants/utils.py 85.71% <94.44%> (+1.93%) ⬆️

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codecov-io commented Apr 28, 2017
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Codecov Report

Merging #1980 into master will increase coverage by 0.01%.
The diff coverage is 90.9%.

Impacted file tree graph

@@ Coverage Diff @@
## master #1980 +/- ##
==========================================
+ Coverage 72.6% 72.61% +0.01% 
==========================================
 Files 1070 1071 +1 
 Lines 54456 54487 +31 
 Branches 7868 7872 +4 
==========================================
+ Hits 39537 39565 +28 
- Misses 13686 13688 +2 
- Partials 1233 1234 +1
Flag Coverage Δ
#smoketests 72.61% <90.9%> (+0.01%) ⬆️
#unittests 70.16% <90.9%> (+0.01%) ⬆️
Impacted Files Coverage Δ
nipype/interfaces/ants/__init__.py 100% <100%> (ø) ⬆️
...terfaces/ants/tests/test_auto_AffineInitializer.py 85.71% <85.71%> (ø)
nipype/interfaces/ants/utils.py 85.71% <94.44%> (+1.93%) ⬆️

Continue to review full report at Codecov.

Legend - Click here to learn more
Δ = absolute <relative> (impact), ø = not affected, ? = missing data
Powered by Codecov. Last update a17af6b...703c9a2. Read the comment docs.

output_spec = AffineInitializerOutputSpec

def _list_outputs(self):
return {'out_file': os.path.abspath(self.inputs.out_file)}
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i'll merge this, but does this not happen automatically from the specified out_file in inputs?

@satra satra merged commit aa9e859 into nipy:master Apr 29, 2017
@oesteban oesteban deleted the enh/AntsAffineInitializer branch May 1, 2017 01:46
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@satra satra satra approved these changes

@mgxd mgxd Awaiting requested review from mgxd

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