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Hanes–Woolf plot

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Graph of enzyme kinetics
Hanes plot of a/v against a for Michaelis–Menten kinetics

In biochemistry, a Hanes–Woolf plot, Hanes plot, or plot of a / v {\displaystyle a/v} {\displaystyle a/v} against a {\displaystyle a} {\displaystyle a} is a graphical representation of enzyme kinetics in which the ratio of the initial substrate concentration a {\displaystyle a} {\displaystyle a} to the reaction velocity v {\displaystyle v} {\displaystyle v} is plotted against a {\displaystyle a} {\displaystyle a}. It is based on the rearrangement of the Michaelis–Menten equation shown below:

a v = a V + K m V {\displaystyle {a \over v}={a \over V}+{K_{\mathrm {m} } \over V}} {\displaystyle {a \over v}={a \over V}+{K_{\mathrm {m} } \over V}}

where K m {\displaystyle K_{\mathrm {m} }} {\displaystyle K_{\mathrm {m} }} is the Michaelis constant and V {\displaystyle V} {\displaystyle V} is the limiting rate.[1]

J. B. S. Haldane stated, reiterating what he and K. G. Stern had written in their book,[2] that this rearrangement was due to Barnet Woolf.[3] However, it was just one of three transformations introduced by Woolf. It was first published by C. S. Hanes, though he did not use it as a plot.[4] Hanes noted that the use of linear regression to determine kinetic parameters from this type of linear transformation generates the best fit between observed and calculated values of 1 / v {\displaystyle 1/v} {\displaystyle 1/v}, rather than v {\displaystyle v} {\displaystyle v}.[4] : 1415 

Starting from the Michaelis–Menten equation:

v = V a K m + a {\displaystyle v={{Va} \over {K_{\mathrm {m} }+a}}} {\displaystyle v={{Va} \over {K_{\mathrm {m} }+a}}}

we can take reciprocals of both sides of the equation to obtain the equation underlying the Lineweaver–Burk plot:

1 v = 1 V + K m V 1 a {\displaystyle {1 \over v}={1 \over V}+{K_{\mathrm {m} } \over V}\cdot {1 \over a}} {\displaystyle {1 \over v}={1 \over V}+{K_{\mathrm {m} } \over V}\cdot {1 \over a}}

which can be multiplied on both sides by a {\displaystyle {a}} {\displaystyle {a}} to give

a v = 1 V a + K m V {\displaystyle {a \over v}={1 \over V}\cdot a+{K_{\mathrm {m} } \over V}} {\displaystyle {a \over v}={1 \over V}\cdot a+{K_{\mathrm {m} } \over V}}

Thus in the absence of experimental error data a plot of a / v {\displaystyle {a/v}} {\displaystyle {a/v}} against a {\displaystyle {a}} {\displaystyle {a}} yields a straight line of slope 1 / V {\displaystyle 1/V} {\displaystyle 1/V}, an intercept on the ordinate of K m / V {\displaystyle {K_{\mathrm {m} }/V}} {\displaystyle {K_{\mathrm {m} }/V}}and an intercept on the abscissa of K m {\displaystyle -K_{\mathrm {m} }} {\displaystyle -K_{\mathrm {m} }}.

Like other techniques that linearize the Michaelis–Menten equation, the Hanes–Woolf plot was used historically for rapid determination of the kinetic parameters K m {\displaystyle K_{\mathrm {m} }} {\displaystyle K_{\mathrm {m} }}, V {\displaystyle V} {\displaystyle V} and K m / V {\displaystyle K_{\mathrm {m} }/V} {\displaystyle K_{\mathrm {m} }/V}, but it has been largely superseded by nonlinear regression methods that are significantly more accurate and no longer computationally inaccessible. It remains useful, however, as a means to present data graphically.

See also

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References

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  1. ^ The term maximum rate is often used, but not recommended by the IUBMB; see Cornish-Bowden, A (2014). "Current IUBMB recommendations on enzyme nomenclature and kinetics". Persp. Sci. 1 (1–6): 74–87. Bibcode:2014PerSc...1...74C. doi:10.1016/j.pisc.201402006 .
  2. ^ Haldane, John Burdon Sanderson; Stern, Kurt Günter (1932). Allgemeine Chemie der Enzyme. Wissenschaftliche Forschungsberichte, Naturwissenschaftliche Reihe, herausgegeben von Dr. Raphael Eduard Liesegang. Vol. 28. Dresden and Leipzig: Theodor Steinkopff. pp. 119–120. OCLC 964209806.
  3. ^ Haldane, John Burdon Sanderson (1957). "Graphical methods in enzyme chemistry". Nature . 179 (4564): 832. Bibcode:1957Natur.179R.832H. doi:10.1038/179832b0 . S2CID 4162570.
  4. ^ a b Hanes, Charles Samuel (1932). "Studies on plant amylases: The effect of starch concentration upon the velocity of hydrolysis by the amylase of germinated barley". Biochemical Journal. 26 (5): 1406–1421. doi:10.1042/bj0261406. PMC 1261052 . PMID 16744959.

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