Clipper: Class List

Clipper

Class List

Here are the classes, structs, unions and interfaces with brief descriptions:

clipper::datatypes::ABCD< dtype > Reflection data type: Hendrickson-Lattman coeff

clipper::Array2d< T > Simple 2-d array class

clipper::Atom Atom class

clipper::Atom_list Atom list class

clipper::AtomSF Atomic scattering factor object

clipper::AtomShapeFn Atomic shape function object

clipper::BasisFn_aniso_gaussian Simple anisotropic Gaussian basis function

clipper::BasisFn_base Abstract base class for resolution function basis functions

clipper::BasisFn_binner Simple binning basis function

clipper::BasisFn_expcubic Simple Expcubic basis function

clipper::BasisFn_gaussian Simple Gaussian basis function

clipper::BasisFn_linear Simple linear basis function

clipper::BasisFn_log_aniso_gaussian Simple anisotropic Gaussian basis function

clipper::BasisFn_log_gaussian Simple log Gaussian basis function

clipper::BasisFn_spline Simple smooth basis function

clipper::CCell CCell container

clipper::Cell Cell object

clipper::Cell_descr Cell description (automatically converts to radians)

clipper::CGrid_sampling CGrid_sampling container

clipper::CHKL_data< T > Reflection data list container

clipper::CHKL_info HKL list and indexing object container

clipper::ClipperInstance

clipper::ClipperInstantiator

clipper::CNXmap< T > Non-Crystallographic map container

clipper::CNXmap_operator< T > Non-Crystallographic map operator container

clipper::Compare_grid

clipper::datatypes::Compute_abcd_from_phifom< dtype > Compute from Phi_fom to ABCD ( C = D = 0 )

clipper::datatypes::Compute_add_abcd< dtype > Add two ABCD datalists

clipper::datatypes::Compute_add_fphi< dtype > Add two F_phi datalists

clipper::datatypes::Compute_diff_fsigf_from_fsigfano< dtype > Compute from F_sigF_anom to F_sigF (difference structure factor)

clipper::datatypes::Compute_EsigE_from_FsigF< dtype > Compute from F_sigF to E_sigE

clipper::datatypes::Compute_fphi_from_fsigf_phifom< dtype > Compute from F_sigF+Phi_fom to F_phi

clipper::datatypes::Compute_FsigF< dtype, T > Compute from F_sigF to F_sigF

clipper::datatypes::Compute_mean_fsigf_from_fsigfano< dtype > Compute from F_sigF_anom to F_sigF (mean structure factor)

clipper::datatypes::Compute_neg_fphi< dtype > Negate F_phi (i.e. advance phase by pi)

clipper::datatypes::Compute_phifom_from_abcd< dtype > Compute from ABCD to Phi_fom by phase integration (loses bimodality)

clipper::datatypes::Compute_scale_u< T >

clipper::datatypes::Compute_scale_u_aniso< T > Apply scale and U to any scalable datatype

clipper::datatypes::Compute_scale_u_iso< T > Apply scale and U to any scalable datatype

clipper::datatypes::Compute_sub_fphi< dtype > Subtract two F_phi datalists

clipper::Container Definition for a generic container Object

clipper::Coord_frac Fractional (cell) coordinates

clipper::Coord_grid Grid coordinate

clipper::Coord_map Map coordinate: this is like Coord_grid, but non-integer

clipper::Coord_orth Orthogonal (Angstrom) coordinates

clipper::Coord_reci_frac Fractional reciprocal coordinate (i.e. non-integer hkl)

clipper::Coord_reci_orth Orthogonal reciprocal coordinate (length of which is invresolsq)

clipper::CResolution Resolution container

clipper::CSpacegroup Spacegroup container

clipper::Curv_frac< T > Fractional (cell) curvatures, with respect to fractional u,v,w

clipper::Curv_map< T > Map coordinate curvatures, with respect to grid u,v,w

clipper::Curv_orth< T > Orthogonal (Angstom) curvatures, with respect to orthogonal x,y,z

clipper::CXmap< T > Crystallographic map container

clipper::datatypes::D_sigD< dtype >

clipper::Datatype_base Reflection data type objects

clipper::datatypes::E_sigE< dtype > Reflection data type: E + sigE

clipper::datatypes::E_sigE_ano< dtype > Reflection data type: E(+) E(+) sigE(+) sigE(-) cov+-

clipper::Euler< T > Euler angle class

clipper::Euler_ccp4 Euler_ccp4 angle class

clipper::datatypes::F_phi< dtype > Reflection data type: F + phi model or map coeff (e.g. Fcalc, Fbest)

clipper::datatypes::F_sigF< dtype > Reflection data type: F + sigF

clipper::datatypes::F_sigF_ano< dtype > Reflection data type: F(+) F(+) sigF(+) sigF(-) cov+-

clipper::BasisFn_base::Fderiv Object holding the basis function and its first two derivatives

clipper::FFTmap FFTmap: P1 map with symmetry used for calculating FFTs

clipper::FFTmap_base

clipper::FFTmap_p1 FFTmap_p1: low level P1 map used for calculating FFTs

clipper::FFTmap_sparse_p1_base Base type for sparse P1 fft maps

clipper::FFTmap_sparse_p1_hx FFTmap_sparse_p1_hx: low level sparse P1 map used for calculating FFTs

clipper::FFTmap_sparse_p1_xh FFTmap_sparse_p1_xh: low level sparse P1 map used for calculating FFTs

clipper::datatypes::Flag Reflection data type: Free-R flag

clipper::datatypes::Flag_bool Reflection data type: boolean (false = missing)

clipper::Generic_ordinal Generic ordinal gernerator

clipper::Grad_frac< T > Fractional (cell) gradient, with respect to fractional u,v,w

clipper::Grad_map< T > Map coordinate gradient, with respect to grid u,v,w

clipper::Grad_orth< T > Orthogonal (Angstom) gradient, with respect to orthogonal x,y,z

clipper::Grid Generic grid

clipper::Grid_range Grid range class: defines array limits for a grid

clipper::Grid_sampling Grid sampling of a unit cell

clipper::Histogram General histogram class

clipper::HKL Reflection 'Miller' index

clipper::HKL_class Reflection class

clipper::HKL_data< T > HKL_data<>

clipper::HKL_data_base HKL_data_base

clipper::HKL_data_cacheobj

clipper::HKL_info HKL list container and tree root

clipper::HKL_lookup Fast reflection lookup object

clipper::HKL_info::HKL_reference_base HKL reference base class

clipper::HKL_info::HKL_reference_coord HKL reference with coord-like behaviour

clipper::HKL_info::HKL_reference_index HKL reference with index-like behaviour

clipper::HKL_sampling HKL sampling of reciprocal space

clipper::HKL_lookup::hlookup Lookup on h

clipper::datatypes::I_sigI< dtype > Reflection data type: I + sigI

clipper::datatypes::I_sigI_ano< dtype > Reflection data type: I(+) I(+) sigI(+) sigI(-) cov+-

clipper::Interp_cubic Wrapper class for third-order (cubic) interpolation fns

clipper::Interp_linear Wrapper class for first-order (linear) interpolation fns

clipper::Interp_nearest Wrapper class for zeroth-order (nearest neighbour) interpolation fns

clipper::Isymop Integerised symmetry matrix

clipper::Xmap_cacheobj::Key

clipper::HKL_data_cacheobj::Key

clipper::HKL_lookup::klookup Lookup on k

clipper::data::LGdata

clipper::HKL_lookup::llookup Lookup on l

clipper::LogPhaseProb< N > Log phase probability distribution object

clipper::Map_index_sort Generic map sorting class

clipper::Xmap_base::Map_reference_base Map reference base class

clipper::NXmap_base::Map_reference_base Map reference base class

clipper::NXmap_base::Map_reference_coord Map reference with coordinate-like behaviour

clipper::Xmap_base::Map_reference_coord Map reference with coordinate-like behaviour

clipper::Xmap_base::Map_reference_index Map reference with index-like behaviour

clipper::NXmap_base::Map_reference_index Map reference with index-like behaviour

clipper::Map_stats Generic map statistics class

clipper::Mat33< T > 3x3-matrix class

clipper::Mat33sym< T > Compressed form for 3x3 symmetric matrix class

clipper::Matrix< T > General matrix class: like Array2d but with numerical methods

clipper::Message Message handler class

clipper::Message_base Base type for messages

clipper::Message_ctor Constructor message (level = 2)

clipper::Message_dtor Destructor message (level = 2)

clipper::Message_fatal Fatal message (level = 9)

clipper::Message_generic Generic message

clipper::Message_info Info message (level = 1)

clipper::Message_warn Warning message (level = 5)

clipper::Metric_tensor Metric tensor

clipper::Mutex Mutex class: used for locking and unlocking shared resources

clipper::NX_operator NX_operator: non-crystal map operator

clipper::NXmap< T > NXmap<T>: actual non-crystallographic map class

clipper::NXmap_base NXmap_base: base for non-crystallographic map class

clipper::NXmap_operator< T > NXmap_operator: non-crystal map operator referencing a particular NXmap

clipper::ObjectCache< T > Object Cache manager

clipper::datatypes::Phi_fom< dtype > Reflection data type: best phi + fom

clipper::Polar_ccp4 Polar_ccp4 angle class

clipper::Prob_phi_2d 2-d angular probability distibution class

clipper::Property< T > Template for a property holding an arbitrary type

clipper::Property_base Base class for properties of arbitrary types

clipper::PropertyManager Class for holding a list of labelled properties of arbitrary types

clipper::Ramachandran Ramachandran plot class

clipper::Range< T > Range - upper and lower bounds of some type

clipper::Range_sampling Range sampling: discrete sampling of a real range

clipper::TargetFn_base::Rderiv Object holding the residual function and first two derivatives

clipper::ObjectCache< T >::Reference ObjectCache reference class

clipper::Resolution Resolution in angstroms

clipper::Resolution_ordinal Resolution ordinal gernerator

clipper::ResolutionFn 2nd order resolution function evaluator

clipper::ResolutionFn_nonlinear 2nd order resolution function evaluator

clipper::Rotation Rotation class

clipper::RTop< T > Rotation-translation operator

clipper::RTop_frac Fractional operator class

clipper::RTop_orth Orthogonal operator class

clipper::data::SFdata

clipper::data::SGdata

clipper::Spacegroup Spacegroup object

clipper::Spgr_cacheobj

clipper::Spgr_descr Spacegroup description

clipper::String String extension with simple parsing methods

clipper::Symop Crystallographic symmetry operator

clipper::Symop_code Compressed encoded symmetry operator

clipper::Spgr_descr::Symop_codes Vector of symop codes and associated methods

clipper::TargetFn_base Abstract base class for least-squares resolution function target functions

clipper::TargetFn_meanEnth< T > Simple mean |E|ⁿ target

clipper::TargetFn_meanFnth< T > Simple mean |F|ⁿ target

clipper::TargetFn_scaleEsq< T > |E|² scaling target

clipper::TargetFn_scaleF1F2< T1, T2 > |F|² scaling target

clipper::TargetFn_scaleI1I2< T1, T2 >

clipper::TargetFn_scaleLogF1F2< T1, T2 > Log |F|² scaling target

clipper::TargetFn_scaleLogI1I2< T1, T2 > Log |I| scaling target

clipper::TargetFn_sigmaa< T >

clipper::TargetFn_sigmaa_omegaa< T >

clipper::Test_base Base class for clipper self-test classes

clipper::Test_core

clipper::data::Test_data Class to return test data

clipper::data::TESThkldata

clipper::data::TESTxyzdata

clipper::Thread_base Thread base class: Override this to create new threads

clipper::U_aniso_frac Anisotropic fractional atomic displacement parameters

clipper::U_aniso_orth Anisotropic orthogonal atomic displacement parameters

clipper::Util Utility class

clipper::Vec3< T > 3-vector class

clipper::Xmap< T > Xmap<T>: actual crystallographic map class

clipper::Xmap_base Xmap_base: base for crystallographic map class

clipper::Xmap_cacheobj

Generated on Tue Oct 28 2014 for Clipper by doxygen 1.7.4