Computational Biophysics Workshop - Pittsburgh, June 1-5, 2015
Lectures
PDF versions of the lecture slides will be posted here as soon as they are available.
- 6/1/2015: Introduction to Protein Structure and Dynamics - Klaus Schulten
- Opening Remarks
- Structure and Sequence Analysis with VMD
- Introduction to Molecular Dynamics with NAMD
- 6/2/2015: Statistical Mechanics of Proteins - Klaus Schulten
- PART 1-Analysis of Equilibrium and Non-equilibrium Properties of Proteins with NAMD
- PART 2-Analysis of Equilibrium and Non-equilibrium Properties of Proteins with NAMD
- PART 1-Applications of VMD/NAMD in Modern Research
- PART 2-Applications of VMD/NAMD in Modern Research
- 6/3/2015: Introductions to Evolutionary Concepts, Network Analysis,and Cell Simulations - Zan Luthey-Schulten
- 6/4/2015: Collective Dynamics of Proteins Using Elastic Network Models - Ivet Bahar, Tim Lezon and Chakra Chennubhotla
- Elastic Network Models (ENMs) and Collective Motions using ANM Server and ProDy API
- ProDy Overview and Applications
- 6/5/2015: Druggability Simulations and Sequence Evolution Patterns - Ivet Bahar, Indira Shrivastava, and Cihan Kaya